Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3008 187 6e-42 >seq3008 Length=76608 Score = 187 bits (206), Expect = 6e-42 Identities = 608/935 (65%), Gaps = 36/935 (4%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||| | ||||| ||||| ||||||||| | ||||| || | | | || Sbjct 41510 TTCGGCTTCAAGACCCTGGAGCGATCCTACCTGTTGAAGATCAACGGCAAAGTGGCCGAG 41451 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || |||||||| ||| | ||||| || | | || ||||| |||| | || || Sbjct 41450 CGGCCGCAGCACATGCTCATGCGCGTGTCCGTCGGGATCCACGAAACGGACATCGACGCG 41391 Query 363511 GCGATTGAAACATATAAGCTTCTA----AGTGCTCGTGTATTCACGCACGCCACGCCAAC 363566 || || || || || || || || || | | || |||| |||||| | || || Sbjct 41390 GCCATCGAGACGTACAACCTGCTGTCGGAGAGGTGGT----TCACCCACGCCTCCCCCAC 41335 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | ||| || || || | |||||| |||| ||||| || || ||||| Sbjct 41334 CCTCTTCAACGCGGGCACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAA 41275 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 |||||| ||||||||| |||| ||||| | ||| | || || || || ||||| Sbjct 41274 GGACGACAGCATCGAGGGCATCTACGACACCTTGAAGCAGTGCGCCCTCATCTCCAAATC 41215 Query 363687 TGCAGGCGGAATTGGTGTATCGATC--CACAAT--GTTCGTGCACAGAACAGTTACATTC 363742 || || || || || || | || | | || | ||| || | ||| ||||| Sbjct 41214 AGCCGGGGGGATCGGCGTGGCCGTCAGCTCCATCCGCTCG---ACGGG-CAGCTACATCG 41159 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 |||||| || |||| || ||||| || |||||||| | || | |||| || | Sbjct 41158 CCGGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTAAGGGTTTACAACAACACGG 41099 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 || | ||||| |||||||| || ||| | || || || || ||||| || |||| Sbjct 41098 CGCGTTACGTGGACCAGGGCGGGAACAAGAGACCCGGCGCTTTCGCCATGTACCTGGAGC 41039 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || || | || || || || ||||| ||| ||||||||||| ||||| Sbjct 41038 CCTGGCACTTTGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGC 40979 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 | | || | || || ||||| || | ||| | | |||| || |||||||| |||| Sbjct 40978 AGAGAGCCAGGGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGCGGGTGG 40919 Query 363983 AG-GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 || ||| || | ||||| ||| | || || |||| || || || || ||| Sbjct 40918 AGAGCA-ACCAGGACTGGTCCCTCATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGC 40860 Query 364042 TGGGGTGACGACTATG--TTGCTCTA-------TACGAAAAGTATGAATCGGAGGGAAAG 364092 ||||| || || | || |||||| ||||| ||| | | |||||| | Sbjct 40859 TGGGGGGAGGAGTTTGAAAAGCTCTACACGTCCTACGAGAAGGAGG----GGAGGGCCAA 40804 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 || ||| | ||| ||| ||| |||| ||| |||||||| || || |||| || Sbjct 40803 GCGCGT-GGTCAAGTCC----CAGCAGCTGTGGCACGCCATCATCGAGTCCCAGACCGAA 40749 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || || || || || ||| |||||||||| | |||||| | ||| |||||| ||| | Sbjct 40748 ACCGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAGAAT 40689 Query 364213 CTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 || || || || || |||||||| || || || || | ||||||||| | |||| Sbjct 40688 CTGGGCACCATCAAGTCCAGCAACCTCTGCACGGAAATCGTCGAATACACCAGCCACGAC 40629 Query 364273 GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||| ||||| || ||||| || ||| ||||||| Sbjct 40628 GAGGTCGCCGTCTGCAACCTGGCCTCGGTCGCGCT 40594 Score = 91.5 bits (100), Expect = 4e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026 ||||||| |||||||||| | ||||||||||| |||||||| ||| | || | Sbjct 39812 TTCCAGATGATCTGAAGCAGCTGTACAAAACCGTCTGGGAAATCTCCCAGAAGACCATAC 39753 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | | |||||||| || ||||| || || || |||||||||||| | ||| | || Sbjct 39752 TCAAGATGGCGGCTGACCGCGGCGCCTTCATTGACCAGAGCCAGTCGCTGAACATCCACA 39693 Query 365087 TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 | | |||| | || || ||| || || |||||| |||||||| |||||| Sbjct 39692 TCGCAGAGCCCAACTACGGCAAACTCACCAGCATGCACTTCTACGGCTGGAAA 39640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303070431360374