Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq562 118 9e-22 >seq562 Length=198046 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| | ||||| || | || ||| | || |||||| || Sbjct 189587 AATATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 189528 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||||||| | || || ||||| || || |||||||| || || ||| Sbjct 189527 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGAT 189468 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||| | | ||||||||| || ||||||| | | | | || ||| || Sbjct 189467 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 189408 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || ||||| || | ||| | ||| | | |||| ||||| Sbjct 189407 AACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 189358 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| | ||||| || | || ||| | || |||||| || Sbjct 185973 AACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 185914 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||||||| | || || ||||| || || ||||| || || || ||| Sbjct 185913 AGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGAT 185854 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||| ||||| | | ||||||||| || ||||||| | | | | || ||| || Sbjct 185853 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTAC 185794 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || || || | ||| | ||| | | |||| ||||| Sbjct 185793 AACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGG 185744 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || | || |||||| ||| | Sbjct 189128 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189069 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| || || |||||||| || || ||||| Sbjct 189068 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189009 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | || ||| || ||| Sbjct 189008 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188949 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | ||| | | |||| ||||| Sbjct 188948 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 188902 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || | || |||||| ||| | Sbjct 189356 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189297 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| || || |||||||| || || ||||| Sbjct 189296 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189237 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | || ||| || ||| Sbjct 189236 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 189177 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | ||| | | |||| ||||| Sbjct 189176 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 189130 Score = 105 bits (116), Expect = 6e-18 Identities = 169/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || | || |||||| ||| | Sbjct 188672 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188613 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| || || |||||||| || || ||||| Sbjct 188612 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 188553 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | || ||| || ||| Sbjct 188552 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188493 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG--ACTATAATGAT 24228 || || || || || || | ||| | ||| | | |||| ||||| | || | |||| Sbjct 188492 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGGGCAGTAAAGTGAT 188433 Query 24229 TC 24230 || Sbjct 188432 TC 188431 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | ||||| || | || || | || |||||| ||| | Sbjct 185742 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185683 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| || || |||||||| || || ||||| Sbjct 185682 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 185623 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| || ||||||| | | | | || ||| || ||| Sbjct 185622 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 185563 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | ||| | | |||| ||||| Sbjct 185562 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 185516 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || | || |||||| ||| | Sbjct 188900 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188841 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| || || |||||||| || || ||||| Sbjct 188840 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 188781 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | || ||| || ||| Sbjct 188780 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188721 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || ||||| || | ||| | ||| | | |||| ||||| Sbjct 188720 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGG 188674 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || | || |||||| ||| | Sbjct 185514 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185455 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| || || ||||| || || || ||||| Sbjct 185454 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 185395 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | || ||| || ||| Sbjct 185394 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAATACAAC 185335 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | ||| | ||| Sbjct 185334 ATCCAGAAGGAGTCCACCCTCCATCTTGTG 185305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429847147948335