Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15037 131 1e-25 seq14982 131 1e-25 seq14949 131 1e-25 seq14867 131 1e-25 seq10112 131 1e-25 seq11336 127 1e-24 seq11064 123 2e-23 seq15403 122 6e-23 seq14890 122 6e-23 seq14950 107 1e-18 seq11622 104 2e-17 seq11614 104 2e-17 seq15347 98.7 7e-16 >seq15037 Length=12961 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 12100 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 12041 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 12040 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 12006 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 9606 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGGCTATCGGTCTCGC 9547 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9546 GCCGGTATTTAGCCTTA 9530 >seq14982 Length=13690 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 11613 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 11554 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 11553 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 11519 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 9122 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGGCTATCGGTCTCGC 9063 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 9062 GCCGGTATTTAGCCTTA 9046 >seq14949 Length=7634 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 553 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 612 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 613 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 647 >seq14867 Length=12646 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 2343 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 2402 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2403 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2437 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 4838 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGGCTATCGGTCTCGC 4897 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4898 GCCGGTATTTAGCCTTA 4914 >seq10112 Length=18371 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 4799 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 4858 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4859 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 4893 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 7317 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGGCTATCGGTCTCGC 7376 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 7377 GCCGGTATTTAGCCTTA 7393 >seq11336 Length=55660 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 25603 AAGCCTGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 25544 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 25543 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 25509 >seq11064 Length=68724 Score = 123 bits (136), Expect = 2e-23 Identities = 134/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 |||| |||| || || | ||| || || ||||| || |||||||| ||||||||| || Sbjct 60396 CCACAGACCCAACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATAGCA 60455 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 ||||||| || | |||||| |||||||| || | | ||||||||||||| | |||| Sbjct 60456 AAAACGACCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGCTGCAGGACATGCTTG 60515 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || | || ||||||||||||| || || || ||||| || || || || Sbjct 60516 ATGGGTTCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGACCT 60573 >seq15403 Length=9273 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||| ||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 4683 AAGCCCGTCCCCTTGGCTGTGGTTTCGCTAGATAGTCGGTAGGGACAGTGGGAATCTCGT 4742 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4743 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 4777 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||| ||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 4894 AAGCCCGTCCCCTTGGCTGTGGTTTCGCTAGATAGTCGGTAGGGACAGTGGGAATCTCGT 4953 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4954 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 4988 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 5929 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGGCTATCGGTCTCGC 5988 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 5989 GCCGGTATTTAGCCTTA 6005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||| ||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 5105 AAGCCCGTCCCCTTGGCTGTGGTTTCGCTAGATAGTCGGTAGGGACAGTGGGAATCTCGT 5164 Query 25957 TAATCCTTTCATGCGCGTCA 25976 | |||| ||||||| ||||| Sbjct 5165 TCATCCATTCATGCACGTCA 5184 >seq14890 Length=13128 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||| ||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 4840 AAGCCCGTCCCCTTGGCTGTGGTTTCGCTAGATAGTCGGTAGGGACAGTGGGAATCTCGT 4899 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 4900 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 4934 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||| ||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 5051 AAGCCCGTCCCCTTGGCTGTGGTTTCGCTAGATAGTCGGTAGGGACAGTGGGAATCTCGT 5110 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 5111 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 5145 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||| ||||||||||||||||||||||||||| | ||||| || |||||||| Sbjct 5262 AAGCCCGTCCCCTTGGCTGTGGTTTCGCTAGATAGTCGGTAGGGACAGTGGGAATCTCGT 5321 Query 25957 TAATCCTTTCATGCGCGTCA 25976 | |||| ||||||| ||||| Sbjct 5322 TCATCCATTCATGCACGTCA 5341 >seq14950 Length=6505 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 1388 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGGCTATCGGTCTCGC 1447 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 1448 GCCAGTATTTAGCCTTA 1464 >seq11622 Length=15083 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 1103 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGGCTATCGGTCTCGC 1162 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 1163 GCCGGTATTTAGCCTTA 1179 >seq11614 Length=4861 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| Sbjct 195 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCGGCTATCGGTCTCGC 254 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 255 GCCGGTATTTAGCCTTA 271 >seq15347 Length=9587 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4083 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 4142 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 4143 GGTTATATTTAG 4154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334877978660267