Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3008 392 4e-104 seq2247 96.9 4e-15 seq594 96.9 4e-15 >seq3008 Length=76608 Score = 392 bits (434), Expect = 4e-104 Identities = 1058/1609 (66%), Gaps = 11/1609 (1%) Strand=Plus/Plus Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518 || || || || |||||||| | || |||| || | ||| |||||||||| | | || Sbjct 40306 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTC 40365 Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578 || || ||||| |||| || || || ||| | ||| || || ||||| || || Sbjct 40366 AGCAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAG 40425 Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638 ||||| || || || || || || | || | | | || || |||| || || || | Sbjct 40426 CCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCTCGGGCACC 40485 Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62698 ||||| | || || || || || || || | ||| |||| ||||||||| ||| | Sbjct 40486 GGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGCT 40545 Query 62699 TTCAGTTTGAGAAAATCAAA--TC-GCCCATCTATTACAAACATGTTCAATGCAACAGAT 62755 ||||| ||| ||||| || || | | || ||||||| | || || || Sbjct 40546 GCGAGTTTCTTAAAGTCAAAGGTCTGCTCGGGGGTGACGTACATGTTGAGCGCGACCGAG 40605 Query 62756 GCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCAGTGCAAA 62813 ||||| || || ||||| ||||| | | || | |||| | || || ||||| | Sbjct 40606 GCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTG--TATTCGACGATTTCCGTGCAGA 40663 Query 62814 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 62873 | || || |||||||||| || | ||| || || || ||||| |||| || || || | Sbjct 40664 GGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTT 40723 Query 62874 TATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 62932 | || || ||| |||| || || ||||| |||| || || || || || | ||| | | Sbjct 40724 TGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCT 40783 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGT 62992 || | | ||| | | ||| ||| || | ||||| || || | | Sbjct 40784 GCTGG-GACTTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAGAGCTTT 40842 Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 || ||||| || ||||| | |||||| || || || || | |||||||| | ||| Sbjct 40843 TCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGAC 40902 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 63111 || || || || ||| || ||||| || || || || ||||| | || || ||| Sbjct 40903 CAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAA 40962 Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171 || || |||| ||| || ||||| ||||| || ||||| || || || ||||| | | Sbjct 40963 -AGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAA 41021 Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 | ||| | ||||| || |||| ||| ||||| | | | || || | ||||| || || Sbjct 41022 CACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCCCGCC 41081 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||| || | ||| | || ||||| || ||||| || | ||| || | | || ||||| Sbjct 41082 CTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGA 41141 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 | || ||||| || | ||| ||||| || | | || || || | | | || Sbjct 41142 GTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGGAGCTGACGGCCACGCC 41201 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 || ||||| || ||| ||||| | ||||| | || || || || ||||||||||| Sbjct 41202 GATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGCCCTC 41261 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || || || ||| ||||| || || || ||||| |||| || | | | || || Sbjct 41262 GATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTGCC 41321 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 ||| || || | ||| || || ||||| || ||||| | || || || || |||||||| Sbjct 41322 CGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGTTGTACGT 41381 Query 63532 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 ||| || || | ||| || ||| || || || || || | || ||||| | |||||| Sbjct 41382 CTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCATGTG 41441 Query 63592 CTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63651 ||| || | || | | ||| ||| || ||||||| ||||||| |||| || || Sbjct 41442 CTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGGGTCTT 41501 Query 63652 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63711 || || || ||||||| || || ||||| ||| |||| || |||||||||| || Sbjct 41502 GAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGAAAATGATGGCCGAGTTGAGGCGGTC 41561 Query 63712 CTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAATGTTTCCCATT 63771 || | | | ||| | | | || | || || || || | || | || Sbjct 41562 TTTGTTGTCTTGAACAAGCTTGAGCGTGTTCTCGGAGATCATGGGGGAGTGGCGTCTGTT 41621 Query 63772 TTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTC 63831 || ||||| |||||| | | ||||||||||| || || || | || || || || Sbjct 41622 CAGGGGGTTGACGTAGTTGTACAGGTCCTCCATCACCTCGCTGAACACCTTCTTCGTCTC 41681 Query 63832 TTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGT 63891 |||||| | || || ||||| || | || || || ||||| || || || |||| || Sbjct 41682 TTTGTGCAAGTTGGAGACGGCGATCCGCGCCGCCAGGATGGCGTAGTCGGGGTGTTTAGT 41741 Query 63892 AGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACACCATT 63951 || ||||| || || || || || || ||||| | || ||||| || || || | Sbjct 41742 CGTGAGGGTGGCGGCGATCTCCGCGGCGAGCGTGTCGAGCTCCACCGTCGTGACGCCGCT 41801 Query 63952 ATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAA 64011 || | || ||||| |||||||| | || | ||||| | | |||| ||| | Sbjct 41802 GTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGATCCACAAAGTCAGCGTTGAG 41861 Query 64012 GCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGACA 64060 || || || | || || || || ||||| || |||||||||||| Sbjct 41862 TCCGTAGCACAGCTTCTGGATGCGCGACGTGATCTTGTCAAACATGACA 41910 >seq2247 Length=89140 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||||||||| ||||| | |||||||| | || || |||||||| | || | ||| | Sbjct 52944 CCTCGTCTCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCGGGCATCAACCCTCTCTTCT 52885 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||| | ||||| || || || ||||| ||||| ||||| || || |||||||||| Sbjct 52884 TGAGCCAATAGATGGAAGCGAAAGAGCCAGAGAAGAAGATTCCCTCCACCGCCGCAAAGG 52825 Query 32803 C 32803 | Sbjct 52824 C 52824 >seq594 Length=47165 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || |||||||| || ||||| || |||||||| | || || || | Sbjct 31781 CACTGAATACTTTCTTGGTTTCTTTATGGAGATTAGAAACGGCTATACGCGCTGCCAGGA 31840 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 || || || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 31841 GAGCGTAGTCGGGATGTTTGGTGGTCAGCGTGGCCGCGGTCTCTGCTGCCAGAGTGTCCA 31900 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||| | || | || ||||| |||||||| Sbjct 31901 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 31946 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 61918 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 61977 ||| || || || ||||| || || |||||| ||| | || ||||| ||||||||||| Sbjct 27067 CCAACCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCTGCAATATGGATATT 27126 Query 61978 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTT 62037 | || || || || |||||| |||| || | ||||| ||||| || | | ||||| Sbjct 27127 TAGGGACTGGCTCTGGTCGATGTAGGCACCACGATCTGCTGCCATCTTGAGGACAGTCTT 27186 Query 62038 TTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 62073 || | |||||||| | ||||||||| | ||||| Sbjct 27187 CTGGGAGATTTCCCACACAGTTTTATACAGCCGCTT 27222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| || || ||||| ||||| | || | || |||||||||| ||| Sbjct 30266 CTCCACTCGTTTCATGAACAGGTCAGGGATCCACATGGCAAAGAACAGATCTCTGGCTCT 30325 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || ||||| || || || ||||| || | || | ||| | | | ||| || ||||| Sbjct 30326 CTGCTCCTCTTTACCAGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAGTGCCA 30385 Query 63187 CGGTTCCAAGTATATGGC 63204 |||||||||||| | ||| Sbjct 30386 CGGTTCCAAGTACACGGC 30403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633497693777200