Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq562 170 4e-37 seq3008 113 8e-20 seq14194 84.2 4e-11 seq14193 84.2 4e-11 seq8851 84.2 4e-11 >seq562 Length=198046 Score = 170 bits (188), Expect = 4e-37 Identities = 181/236 (77%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | ||||| | ||||||| || | || || |||||||| || |||||||| | Sbjct 188438 TTTACTGCCCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGT 188497 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | |||||||| || | |||||||| | |||||| ||||| || || || || || || | Sbjct 188498 AGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGAT 188557 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT- 68405 | || || ||||||||||| || || ||||| ||||| ||| |||||||||||| ||| Sbjct 188558 CTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTG 188616 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || |||| |||||||| || || ||||||||||| || || |||||||| Sbjct 188617 GGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 188672 Score = 165 bits (182), Expect = 2e-35 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| || || |||||||| || |||||| Sbjct 188674 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 188733 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || || || || || || || Sbjct 188734 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 188793 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||| || || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 188794 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCGAC 188852 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || ||||||||||| ||||| |||||||| Sbjct 188853 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 188900 Score = 163 bits (180), Expect = 5e-35 Identities = 164/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || |||||||| || |||||||| || |||||||| || | |||||||| | Sbjct 185307 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTATTCGGAGAGGGTGCGGCCATCTTCCA 185366 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || || || || || || || || || |||||||| || || | Sbjct 185367 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGA 185426 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTT 68432 |||| ||||| ||| |||||||||||| ||| | || || |||| |||||||| || Sbjct 185427 TCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCGACCTCCAGCGTGATGGTCTTG 185485 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| |||||||| Sbjct 185486 CCAGTGAGGGTCTTCACGAAGATCTGCAT 185514 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||||||| || | || || |||||||| || |||||||| || |||||| Sbjct 185744 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 185803 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || || || || || || || Sbjct 185804 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 185863 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || |||||||| || || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 185864 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCGAC 185922 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||| || || || |||||||| Sbjct 185923 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 185970 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| || || |||||||| || |||||| Sbjct 188902 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 188961 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || || || || || || || Sbjct 188962 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189021 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||| || || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 189022 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCGAC 189080 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || ||||||||||| || || |||||||| Sbjct 189081 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189128 Score = 161 bits (178), Expect = 2e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| || || |||||||| || |||||| Sbjct 189130 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 189189 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || || || || || || || Sbjct 189190 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189249 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||| || || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 189250 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCGAC 189308 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || ||||||||||| || || |||||||| Sbjct 189309 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189356 Score = 156 bits (172), Expect = 8e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| || || |||||||| || |||||| Sbjct 185516 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 185575 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || || || || || || || Sbjct 185576 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGG 185635 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||| || || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 185636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCGAC 185694 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || ||||||||||| || || |||||||| Sbjct 185695 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 185742 Score = 156 bits (172), Expect = 8e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | || || ||||| || || |||||||| || |||||| Sbjct 189358 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 189417 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| || || || || || || || || || Sbjct 189418 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189477 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||||||||| || || ||||| ||||| ||| |||||||||||| ||| | || || Sbjct 189478 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC-GCTGGGCTCGAC 189536 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||| || || || |||||||| Sbjct 189537 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 189584 >seq3008 Length=76608 Score = 113 bits (124), Expect = 8e-20 Identities = 284/424 (67%), Gaps = 6/424 (1%) Strand=Plus/Plus Query 31725 GTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGC 31784 ||||||||||| || || | || || |||||| | |||||||||| ||| || Sbjct 40639 GTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGG 40698 Query 31785 ATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTG 31843 || ||||| ||| || || ||| |||| |||| ||| ||| |||| || ||| |||| Sbjct 40699 TTGCTCTTCCTGTTGCAGGC-GTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTG 40757 Query 31844 CGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTC 31903 | ||| || || | ||| | | | | ||||| || ||| || | |||||| Sbjct 40758 GGACTCGATGATGGCGTGCCACAGCTGCTGGGACTTGACCACGCGCTTGGCCCTCCCCTC 40817 Query 31904 GGACTCGTAGCGAAGA-TACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGG 31962 ||||||| || | || || | || |||||| || || ||| || |||| Sbjct 40818 CTTCTCGTAG-GACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGG 40876 Query 31963 GACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACA 32022 | ||||| ||||| | ||| ||||| | | | ||| || ||||||||||||| Sbjct 40877 GGCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCATGAACA 40936 Query 32023 GGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGT 32082 ||||| | |||||| ||||| || || | |||||| | || ||||| ||| || Sbjct 40937 GGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGT 40996 Query 32083 TACGTC-GGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCG 32141 | | || ||| ||||||||| | | ||| ||| |||||| ||||||| |||| Sbjct 40997 T-CTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCG 41055 Query 32142 AAAG 32145 |||| Sbjct 41056 AAAG 41059 >seq14194 Length=7087 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| || || ||| |||||||||| ||| ||||| Sbjct 2745 CATCACGCCCATCCTCTGGTACTCGCCCACACGCTTCTCAAAGAAGTTGGTCTTCCCCTC 2804 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||||||||||||||| Sbjct 2805 CAGAGAGATGTTCTCCATGAAGTCAAAGGGGTTCTC 2840 >seq14193 Length=36040 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||| |||||| | |||||||||| || || ||| |||||||||| ||| ||||| Sbjct 33930 CATCACGCCCATCCTCTGGTACTCGCCCACACGCTTCTCAAAGAAGTTGGTCTTCCCCTC 33871 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||||||||||||||| Sbjct 33870 CAGAGAGATGTTCTCCATGAAGTCAAAGGGGTTCTC 33835 >seq8851 Length=91393 Score = 84.2 bits (92), Expect = 4e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 268500 CGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGC 268559 |||| || || || || | ||||||||| || | | |||||||| || ||||||||| Sbjct 20460 CGTAAGGGGAGCGAGGGTAGAAGGGCGTGGTCTCCGTCTGAGGGATCTCATGGACTTTGC 20519 Query 268560 CAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTC 268619 | | ||||| ||| || || ||||||||||| || || | |||||| | Sbjct 20520 CGTAAAGCTCACTGGTGGAGGCCTGGTAGAACTTCACGGTGTTGGTCAAACCGCACGTCT 20579 Query 268620 GGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCA 268679 | || || || | |||||| || |||| ||| ||||||| || || ||||| | || Sbjct 20580 TCACGGCGTCCAGGAGACGAAGTGTGCCCACGCCGTCCACGTTGGCGGTGTACTCGGCCA 20639 Query 268680 TCTCGAATGACACCTG 268695 |||||| || | ||| Sbjct 20640 ACTCGAAGGAGATCTG 20655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921427050612040