Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3008 634 1e-176 seq14194 118 2e-21 seq14193 118 2e-21 seq2247 114 2e-20 seq594 113 9e-20 >seq3008 Length=76608 Score = 634 bits (702), Expect = 1e-176 Identities = 1114/1605 (69%), Gaps = 52/1605 (3%) Strand=Plus/Plus Query 244003 CTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAA 244062 ||| || || || ||||| |||| |||||| | ||| | ||||||||||| ||| Sbjct 39945 CTGAACGGACCCGTTGTGACCGATCAGCTGGTTCTTCATCTCCTCGTTCCACAGCCCC-- 40002 Query 244063 GCGCTC---CAGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCAC 244119 | ||| ||| | | || ||| || ||| || | ||| ||||| || || || || Sbjct 40003 -CTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTGACTATCTGGAACTCCCCGGAGAGGAC 40061 Query 244120 GCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTG 244179 | ||| ||||| ||||||| || ||||||||| ||| |||||||||| ||||| Sbjct 40062 CCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTG 40121 Query 244180 CGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTG 244239 || ||| || || ||||| |||| || |||||| |||||||||||||||||| | Sbjct 40122 GGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGC 40181 Query 244240 GATGCGGAGTCTGAGCTCGTTC--CAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGG 244297 ||| || ||| ||| ||| ||| || || | ||||| | | || Sbjct 40182 GAT-------CTT--CTCCTTCAGCAGGCCC-CAGTCCAGC-AGGTCGGTGGGCTTCTTC 40230 Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 |||||||||| ||||||| | ||| ||||||||||| |||| |||| ||| |||| Sbjct 40231 TCCCACATGTCGTACTGCAGGATGCCCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAG 40290 Query 244358 GGACCGTCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 || ||| || | | |||||||| |||||| | || |||||||||||||||| |||||| Sbjct 40291 GGGCCGA-GCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTC 40349 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCTT-GCCGCAGGTGAAGGGGATGCCCATCATCA 244475 ||||||| | |||||| | || | ||| | || ||| ||| | ||| | | Sbjct 40350 GAAGATCTGCGTGTTCA-GCAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGA 40408 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGC 244535 ||||| ||||||||| || ||||||||||| || || || | ||| ||| ||||||| Sbjct 40409 TGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACT 40468 Query 244536 GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGA 244595 ||| |||||||| || || |||||| |||||| | |||||| | ||| | || Sbjct 40469 TTTCGGCCTCGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGA 40528 Query 244596 TCA-TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATG 244654 | | | || | ||| | || || || |||||| | || | ||||| | || Sbjct 40529 TTACTTTGGTC-ACGGCTGCGAGTTTCTTAAAGTCAAA------GGTCTGCTCGGGGGTG 40581 Query 244655 GTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCC 244714 || || |||||| ||||| |||||||||||||||||| ||||| || Sbjct 40582 ---------ACGTACATGTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCG 40632 Query 244715 GAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGC 244774 | ||||||| | ||| || || ||||||||||| ||| |||||||||||||||| | | Sbjct 40633 TGGCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 40692 Query 244775 TGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 ||||| ||| ||| |||||||||||| ||||| |||||| | ||| ||||| ||| Sbjct 40693 TGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCG 40752 Query 244835 AGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG 244894 ||||| ||| || | || ||| || | | | ||||||| | ||| | Sbjct 40753 GTCTGGGACTCGATGATGGCGTGCCACAGCTGCTGGGACTTGACCACGCGCTTGGCCCTC 40812 Query 244895 CCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGG 244954 ||||| ||||||| ||||| || || ||||| |||||| |||||| || Sbjct 40813 CCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGC 40872 Query 244955 CCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCAT 245013 ||||||||| || ||| |||||||| ||| || | | || |||| || ||| Sbjct 40873 CCGGGGCAC-TCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCAT 40931 Query 245014 GAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCC 245073 ||| |||||||||||||| | ||| | ||| |||||||||| |||||||| ||| || Sbjct 40932 GAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCC 40991 Query 245074 AGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGAC 245133 ||||||||| ||||||||| ||||| || ||||| | |||||||||||||| ||| | Sbjct 40992 CGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACAT 41051 Query 245134 AGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAA 245193 |||| |||||||| | |||||| || ||||||||||| | | | |||| | Sbjct 41052 GGCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTA 41111 Query 245194 GATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC 245253 | | || | || || | ||||| |||| |||||||||||| ||||||| ||| Sbjct 41112 AACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCC 41171 Query 245254 CTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGC 245313 | | | || | ||||| || || ||| | || ||||| |||||||||||||| Sbjct 41172 CGTCGAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGC 41231 Query 245314 GCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAA 245373 ||| ||| | |||||| |||||||| |||||||| ||||||| |||||| || Sbjct 41232 GCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 41291 Query 245374 GCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGT 245433 |||| ||||||||| ||| || | ||| || |||||| || |||||| ||||||||| Sbjct 41292 GCAGCTGGACAGCTGTGGCCTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGT 41351 Query 245434 AAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTG 245493 || | | ||| || | |||||||| || |||||||||| |||| Sbjct 41352 GAACCACCTCTCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTG 41411 Query 245494 GATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CG 245548 |||| | || ||| | |||||| ||||||| ||| || | || | || || Sbjct 41412 GATCCCGACGG-ACACGCGCATGAGCATGTGCTGCGGC----CGCTCGGCCACTTTGCCG 41466 Query 245549 GGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| | || |||||| ||||| || |||||||| || ||| Sbjct 41467 TTGATCTTCAACAGGTAGGATCGCTCCAGGGTCTTGAAGCCGAAG 41511 >seq14194 Length=7087 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | ||||| ||||||||||||||||| || ||||||| ||||||||| Sbjct 3620 TGGTGGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 3561 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || || ||||| ||||| || |||||||| Sbjct 3560 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACTTTCTCCAACGAGCTGATCAGCAGA 3502 Query 42825 GACGAGG 42831 ||||||| Sbjct 3501 GACGAGG 3495 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 2835 CCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 2776 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 2775 TGTGGGCGAGTACCAG 2760 >seq14193 Length=36040 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | ||||| ||||||||||||||||| || ||||||| ||||||||| Sbjct 33055 TGGTGGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 33114 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || || ||||| ||||| || |||||||| Sbjct 33115 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACTTTCTCCAACGAGCTGATCAGCAGA 33173 Query 42825 GACGAGG 42831 ||||||| Sbjct 33174 GACGAGG 33180 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 33840 CCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGGAAGACCAACTTCTTTGAGAAGCG 33899 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 33900 TGTGGGCGAGTACCAG 33915 >seq2247 Length=89140 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| || | || |||||| | || || ||||| ||||||||||| ||| | ||||| ||| Sbjct 52812 GAGCGGATTGTGGCCTTTGCGGCGGTGGAGGGAATCTTCTTCTCTGGCTCTTTCGCTTCC 52871 Query 42759 ATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 |||| ||||||||| ||| | || ||||||||| || |||| ||| ||||| || || Sbjct 52872 ATCTATTGGCTCAAGAAGAGAGGGTTGATGCCCGGCCTTACCTACTCCAACGAGCTGATT 52931 Query 42819 AGCAGGGACGAGG 42831 ||||| ||||||| Sbjct 52932 AGCAGAGACGAGG 52944 >seq594 Length=47165 Score = 113 bits (124), Expect = 9e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 28761 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATG 28820 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||| ||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 28821 GACTCATTGTTTCCCAGGATCTGGGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 28880 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 |||||||||||||| ||||| Sbjct 28881 CTGTTCCTCACGCCATGCCT 28900 Score = 107 bits (118), Expect = 4e-18 Identities = 157/218 (72%), Gaps = 12/218 (6%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG---TCGCGCTGGGCCAGC 244378 |||||||||||||| || ||||||| |||||| ||| || |||| |||||| Sbjct 29139 CCCTTGCTGACGGGAGACCCGGCGTAGGTTTCGTAGGGGCCGAGCTC-CGCT--GCCAGC 29195 Query 244379 TTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC---ATCTTGTTCATG 244435 | |||||| | || ||||| |||||||| |||||||| |||||| || ||| || Sbjct 29196 TCACAGCTGGCCTCCAGGGCAGCGTAGTAAATGGTCTCAAAGATCTGAATGTTGAGCAAC 29255 Query 244436 TCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495 | |||||| || ||||| | | ||| | |||||| | |||||||| ||| Sbjct 29256 T---GGGCCTCCGGGCTTTCAAAGGGAAAACGCATTAGGATGAAGGCATCGGCCAGACCC 29312 Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 ||||| ||||| || || || ||||| |||||||| || Sbjct 29313 TGCACTCCGATTCCAATCGGCCTGTGGCGCTTGTTAGA 29350 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||| ||||| |||||||| | ||| ||| || || |||| |||||||| || Sbjct 30278 CATGAACAGGTCAGGGATCCACATGGCAAAGAACAGATCTCTGGCTCTCTGCTCCTCTTT 30337 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 |||||||||||| ||| ||| || |||||||| || ||| |||||| || |||| ||| Sbjct 30338 ACCAGTGTTCTTCTTCAACTCTAAGAAGTCAAACACATCGGAGTGCCACGGTTCCAAGTA 30397 Query 245131 GACAGCGAGGGCGCCGGG 245148 || |||| ||| ||||| Sbjct 30398 CACGGCGAAGGCCCCGGG 30415 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| || ||||| ||||| || || ||| | || ||||| Sbjct 29773 CACCTCGTCTTTGCTTGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGT 29832 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||| | ||| || ||| ||| ||||||||||||||||||||||||| Sbjct 29833 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATG 29884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944139035502320