Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3008 174 2e-38 seq594 98.7 1e-15 >seq3008 Length=76608 Score = 174 bits (192), Expect = 2e-38 Identities = 890/1399 (64%), Gaps = 60/1399 (4%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| ||||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 40072 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 40131 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | | || ||| Sbjct 40132 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 40191 Query 114062 TTGAGGGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 114115 || || | ||||||| || | || |||| |||||| |||| || || Sbjct 40192 TTCAGCAGGCCCCAGTCCAGCAGGTCGGTGGGCTTCTTCTCCC------ACATGTCGTAC 40245 Query 114116 TGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC 114175 || ||||| || || | | || | ||| | | |||||||| ||||| | | Sbjct 40246 TGCAGGATGCCCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCGAGCTCGGCG 40305 Query 114176 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 114235 |||| ||| |||||||||| ||||| |||| || | ||||| || || | | ||| Sbjct 40306 GCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTC 40365 Query 114236 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGA 114295 | || || ||| | || |||| | || | || || | || || | Sbjct 40366 AGCAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAG 40425 Query 114296 CCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---C 114352 ||||| || |||| || || || || || | | | || |||||| ||| ||| | Sbjct 40426 CCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTT---CGGCCTCGGGC 40482 Query 114353 ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATT 114412 || ||||| || || | ||||| | | | || | |||||| || || || || | Sbjct 40483 ACCGGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACG 40542 Query 114413 TCATGAAGCTTTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 114470 | || |||| ||| ||||| | | ||| |||| ||| | || | Sbjct 40543 GCTGCGAG--TTTCTTAAAGTCAAAGGTCTG---CTCGGGGGTGACGTACATGTTGAGCG 40597 Query 114471 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 114530 ||| || ||||| || || || | | ||| || | ||||| || | ||||||| Sbjct 40598 CGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTTCCG 40657 Query 114531 TACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 114588 | || | || || ||| | |||||||||| |||| || || ||| |||| || Sbjct 40658 TGCAGAGGTTGCTGGACT--TGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCA 40715 Query 114589 CGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 114648 || || ||||| |||||||||||||| || || || || ||||||| || || || | Sbjct 40716 GGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTG 40775 Query 114649 CCAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGT 114707 ||| | | | | | || | || || ||||| | |||||||| |||||| |||| Sbjct 40776 CCACAGCTGCTGGGACTTGACCACGCGC-TTGGCCCTCCCCTCCTTCTCGTAGGACGTGT 40834 Query 114708 AGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGA 114767 |||| ||||||||| || ||| | ||| ||||| || || | || || | Sbjct 40835 AGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACA 40894 Query 114768 AGAGAGACCATTGACCACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAG 114825 ||| ||||| | || | ||| || ||||||||||| ||||| |||||||| | Sbjct 40895 TGAGGGACCA--GTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACAT 40952 Query 114826 AGCTGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 114884 || |||| || |||| | | ||| || | | ||| || || || ||||| Sbjct 40953 GGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCA 41011 Query 114885 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC--CTTACG 114942 ||||| | | || |||||| || |||||||||| |||| | || | | Sbjct 41012 GGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCT 41071 Query 114943 ACGACCAG-CCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGA 115001 || | |||||| || || | ||| ||| || | || | ||||| || | || Sbjct 41072 TGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGA 41131 Query 115002 TACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTC--TGACATCATG 115059 || | || | ||| || || || | || || || | || ||| Sbjct 41132 GCCCGTTGGAGTTGCCGTTGGTGCC-------GGCGATGTAGCTGCCCGTCGAGCGGATG 41184 Query 115060 GATGTG-----CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGA 115114 || || || || || ||||| || | || ||||| | ||||||| | | | Sbjct 41185 GAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAG 41244 Query 115115 CTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATT 115174 || ||||||| || ||||| ||| |||| | |||| ||||||||||| |||| Sbjct 41245 GTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGC 41304 Query 115175 TGTGGCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT- 115231 ||||||| |||||| || |||||||||||||| || | |||||| ||||| |||| Sbjct 41305 TGTGGCCTGTTGGTG--CCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAC-CACCTC 41361 Query 115232 TGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 115291 | |||| | | ||| ||||| | | | ||| ||||| |||| || |||| Sbjct 41362 TCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACG 41421 Query 115292 GAGACCCGCATAAACATGT 115310 || || ||||| | ||||| Sbjct 41422 GACACGCGCATGAGCATGT 41440 >seq594 Length=47165 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||||| | |||||||||| |||| ||| ||||||||||| Sbjct 28794 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTTCCCAGGATCTGGGCGGTGGAA 28853 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| ||| || ||||| Sbjct 28854 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 28885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597226983437560