Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq786 95.1 1e-14 seq7122 89.7 6e-13 seq7072 87.8 2e-12 seq10928 82.4 8e-11 >seq786 Length=218530 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/94 (83%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||| ||||||| || | | |||||||||| ||||| |||||||||||||||| ||| Sbjct 133187 GAAAAGATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATA 133246 Query 57057 CTCACCACTATACTACCGAGGATTGA-ATATATA 57089 || ||||||||||| |||||| || ||||||| Sbjct 133247 CTGTCCACTATACTAACGAGGAAGGACATATATA 133280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| ||||||| || | | |||||||||| ||||| |||||||||||||||| |||| Sbjct 132059 AAAAGATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 132118 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||| |||||| Sbjct 132119 TGTCCACTATACTAACGAGGA 132139 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||| ||||||| || | | |||||||||| ||||| |||||||||||||||| |||| Sbjct 132289 AAAAGATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATAC 132348 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||| |||||| Sbjct 132349 TGTCCACTATACTAACGAGGA 132369 >seq7122 Length=63268 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| || Sbjct 50071 AAAAGTTTTGACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 50130 Query 57056 ACTCACCACTATACTACCGAGGA 57078 |||||||||||||||| |||||| Sbjct 50131 ACTCACCACTATACTAACGAGGA 50153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 24056 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 24115 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 24116 TACTAACGAGGAGTGA 24131 >seq7072 Length=106659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062 ||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||| Sbjct 25622 TTTACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 25681 Query 57063 ACTATACTACCGAGGA 57078 ||||||||| |||||| Sbjct 25682 ACTATACTAACGAGGA 25697 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGC 57049 |||| |||| ||| |||| || | | ||| |||||| ||||||||||||||||||| Sbjct 24543 TTTAAAAAAAGCTTTGACTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGC 24602 Query 57050 GGACATACTCACCACTATACTACCGAGGA 57078 || |||||||||||||||||| |||||| Sbjct 24603 GGGGATACTCACCACTATACTAACGAGGA 24631 >seq10928 Length=384061 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || || |||||||||||||||||| | |||||||| || || ||||| |||||| Sbjct 2141 CTCCCCGTCAGGAAATCGAACCCTGGTCTTCTGCGTGACAAGCAGAGATACTGTCCACTA 2200 Query 57067 TACTACCGAGGATTGAAT 57084 ||||| |||||| || || Sbjct 2201 TACTAACGAGGAGTGTAT 2218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543097659256880