Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3008 264 1e-65 seq594 84.2 2e-11 >seq3008 Length=76608 Score = 264 bits (292), Expect = 1e-65 Identities = 1028/1603 (64%), Gaps = 41/1603 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| || |||||| || ||||| | ||||| | |||| Sbjct 41519 TACAACTTCTTCGGCTTCAAGACCCTGGAGCGATCCTACCTGTTGAAGATCAACGGCAAA 41460 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| ||||| || |||| |||||||| || ||||||| |||| ||| Sbjct 41459 GTGGCCGAGCGGCCGCAGCACATGCTCATGCGCGTGTCCGTCGGGATCCACGAAACGGAC 41400 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAG-----ACATGCGG---GACAAGAGGTATACCA 93889 || ||| |||| | | ||| || ||| | || | | ||| ||| Sbjct 41399 AT--CGAC------GCGGCCATCGAGACGTACAACCTGCTGTCGGAGAGGTGGTTCACCC 41348 Query 93890 TGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||| |||| ||||| ||||||||||| ||| ||||||| |||| || |||| Sbjct 41347 ACGCCTCCCCCACCCTCTTCAACGCGGGCACCAACAGGCCACAGCTGTCCAGCTGCTTCC 41288 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | | | |||| |||| |||| || || | ||||| | | ||| | || || Sbjct 41287 TGCTCGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACCTTGAAGCAGTGCGCCC 41228 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| |||| || ||||| ||||| | ||| | | | || | | ||| Sbjct 41227 TCATCTCCAAATCAGCCGGGGGGATCGGCGTGGCCGTCAGCTCCATCCGCTCGACGGGCA 41168 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 ||||||| ||| ||||| |||| ||||||||| |||||||| ||||| |||| | || Sbjct 41167 GCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTAAGGGTTTACA 41108 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| ||||||| |||||||||||||| || | ||| || ||||||| | | Sbjct 41107 ACAACACGGCGCGTTACGTGGACCAGGGCGGGAACAAGAGACCCGGCGCTTTCGCCATGT 41048 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || |||||||||||| |||||| | ||| | || ||| |||||| || | Sbjct 41047 ACCTGGAGCCCTGGCACTTTGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGAA 40988 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | |||| ||||| ||||| |||||||| | ||| | || ||||| || |||| Sbjct 40987 AGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGA 40928 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | || || |||| ||| | |||| || | |||||||| || || ||||| ||| Sbjct 40927 AGCGGGTGGAGAGCAACCAGGACTGGTCCCTCATGTGTCCCAACGAGTGCCCCGGGCTGG 40868 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGT--TACGAATCGCAGGGCAA 94427 ||| || || | |||||| | | || | ||| ||||| | |||| | Sbjct 40867 ACGAGTGCTGGGGGGAGGAGTTTGAAAAGCTCTA--CACGTCCTACGAGAAGGAGGGGAG 40810 Query 94428 GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 ||||| | || | | | | |||||||| | ||| | || ||| || Sbjct 40809 GGCCAAGCGCGTGGTCAAGTCCCAGCAGCTGTGGCACGCCATCATCGAGTCCCAGACCGA 40750 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 || || ||||| ||||| ||| ||| ||| | |||| ||| |||||| ||| | Sbjct 40749 AACCGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAGAA 40690 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 || || |||||| | || || ||||| || || ||||| || || | || Sbjct 40689 TCTGGGCACCATCAAGTCCAGCAACCTCTGCACGGAAATCGTCGAATACACCAGCCACGA 40630 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTA 94667 |||| | || || || ||||||| ||| || | || || | || || | || Sbjct 40629 CGAGGTCGCCGTCTGCAACCTGGCCTCGGTC--GCGCTCAACAT--GTACGTCA--CC-- 40578 Query 94668 CACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTT 94727 | || | | || || | || | || | | | | | || ||| Sbjct 40577 CCCGAGCA----GACCTTTGACTTTAAGAAACTCGCAGCCGTGACCAAAGTAATCGTCAA 40522 Query 94728 GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAA 94787 ||| |||||| | | ||||||| |||||||| || || || ||||| || || || || Sbjct 40521 AAACTTGAACAAGATCATCGACATCAACTTCTATCCGGTGCCCGAGGCCGAAAAGTCCAA 40462 Query 94788 CCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGAT 94847 | | || ||||| || || |||||||| || || || || ||||| | | | || Sbjct 40461 CAGGCGCCACCGGCCGATAGGAATCGGCGTGCAAGGCTTGGCCGACGCCTTCATCCTCAT 40402 Query 94848 GCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCAT 94907 |||| || | ||| ||| || | |||| | | || ||||| | | | Sbjct 40401 GCGTTACCCGTTCGAGAGCCCCGAAGCTCAGCTGCTGAACACGCAGATCTTCGAGACCCT 40342 Query 94908 TTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACG 94966 || |||| ||| | || | | | | | | ||||| | || ||| || ||| Sbjct 40341 CTACTACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGCC---GCCGAGCTCGGCCCCTACG 40286 Query 94967 AATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGA 95026 | ||| | || | ||| | | |||||| | |||| |||| | |||| || Sbjct 40285 AGACGTACGCGGGCTGCCCCGTCAGCCGGGGCATCCTGCAGTACGACATGTGGGAGAAGA 40226 Query 95027 AGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTGATGTTATCAAACACGGTGT 95084 ||||| | | ||| ||||||| ||| | | | || | ||| ||||| || Sbjct 40225 AGCCCACCGACCTGCTGGACTGGGGCCTGCTGAAGGAGAAGA--TCGCCAAGCACGGCGT 40168 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 || ||| ||||| |||| || ||||||||||||||||| || |||||||| ||||| Sbjct 40167 GAGGAACAGCCTGCTGCTGGCGCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAA 40108 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 ||||||||| |||| |||| |||| |||| | |||| | | |||| ||| ||||||| Sbjct 40107 CAACGAGTCCATCGAGCCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGA 40048 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGA 95264 |||| | ||||| || || || |||||||| ||| ||||| || Sbjct 40047 GTTCCAGATAGTCAACCCCCATCTGCTCAAAGACCTGACTGAGAGGGGGCTGTGGAACGA 39988 Query 95265 CAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAG 95307 || | |||||||| ||| | | |||||| ||||| ||| Sbjct 39987 GGAGATGAAGAACCAGCTGATCGGTCACAACGGGTCCGTTCAG 39945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 93330 TGTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGA 93389 ||||||||| ||||||||||| | | | | || || ||| | || || || |||| Sbjct 41910 TGTCATGTTTGACAAGATCACGTCGCGCATCCAGAAGCTGTGCTACGGACTCAACGCTGA 41851 Query 93390 CTTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCAC 93449 ||| |||||||| | | || |||| |||| |||| ||||| | || ||| ||||| Sbjct 41850 CTTTGTGGATCCGGCCCAGATCACGATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCAC 41791 Query 93450 AACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCC 93509 || || |||||||| || |||||||||| ||| | | | || || ||||| Sbjct 41790 GACGGTGGAGCTCGACACGCTCGCCGCGGAGATCGCCGCCACCCTCACGACTAAACACCC 41731 Query 93510 GGACTACTCCATTTTGGCTGCTCGAATC 93537 |||||| |||| |||| || || ||| Sbjct 41730 CGACTACGCCATCCTGGCGGCGCGGATC 41703 >seq594 Length=47165 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || || |||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 28897 CATGGCGTGAGGAACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCCCAGATC 28838 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || || ||||| ||||| | || ||| |||| |||| | |||| | | |||||||| Sbjct 28837 CTGGGAAACAATGAGTCCATTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTC 28778 Query 95197 GCCGGGGAATTCCCCGTCA 95215 | || || || | |||| Sbjct 28777 TCGGGAGAGTTTCAGGTCA 28759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494618337233720