Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3008 241 1e-58 seq594 96.9 3e-15 seq562 84.2 2e-11 >seq3008 Length=76608 Score = 241 bits (266), Expect = 1e-58 Identities = 959/1492 (64%), Gaps = 42/1492 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | || || | ||| ||||| ||||| || || || || |||| || || Sbjct 40078 TTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 40137 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| ||||| || || |||| || ||||||| || | ||||||| | Sbjct 40138 GGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGC 40197 Query 153195 --GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTC 153252 ||| ||| ||| ||| | | || || | ||||||||||||||| | | | Sbjct 40198 AGGCC--CCAGTCCAGCAGGTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGC 40255 Query 153253 CTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTG-GGCCAGTTCG 153311 | || ||| |||| | ||| || |||| |||| |||| || | |||||| ||| Sbjct 40256 CCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCG 40314 Query 153312 CAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCC 153371 ||||| ||||| || ||| | ||||| | ||| ||| ||| || | || || | Sbjct 40315 CAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGA 40374 Query 153372 GCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATA 153431 ||||| ||||||| |||| |||| || | ||||||||||||| || || | Sbjct 40375 GCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACG 40434 Query 153432 CCGACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGAT 153486 |||| || || || || || | |||| | |||||| || | |||| Sbjct 40435 CCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCTCGGGC-----ACCGGAT 40489 Query 153487 AGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAA 153546 || ||| ||||| || ||||| | ||| || | ||||| || | || | Sbjct 40490 AGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGCTGCGA 40549 Query 153547 GTTTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGAC 153605 |||||| || ||| ||||| ||| | | |||| ||| || | || | || Sbjct 40550 GTTTCTTAAAGTCAAAGGTCTGCTCGGGGGTGACGTA--CAT--GTTGAGCGCGACCGAG 40605 Query 153606 GCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGG 153665 ||||| || |||||||| ||| ||| | | |||| | ||||| || | ||||||| Sbjct 40606 GCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTTCCGTGCAGAGG 40665 Query 153666 TTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTG 153725 |||||| | || ||| ||||| ||| || || ||||| || | ||||| ||||||||| Sbjct 40666 TTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTG 40725 Query 153726 AAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCC 153785 | |||||||| || |||||| ||| || | |||| ||| ||| | | Sbjct 40726 TACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCTGC 40785 Query 153786 TGCG-CTCG--CACCCGCT--GCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTC 153840 || | || | ||| |||| ||| | ||||| ||||||| | ||| || Sbjct 40786 TGGGACTTGACCACGCGCTTGGCC-----CTCCCCTCCTTCTCGTAGGACGTGTAGAGCT 40840 Query 153841 GCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCG 153900 |||||||| || || |||| ||| | || ||||| |||| | |||||||| || | Sbjct 40841 TTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGG 40900 Query 153901 ACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACA 153960 |||| | || | | || || ||||||||| || || | ||| | ||||| | Sbjct 40901 ACCAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGA 40960 Query 153961 TGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGCT 154018 ||||| | || | ||| |||||| ||| |||| ||||| | || | | Sbjct 40961 AAAGGTCCCTGGCTCTCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTC 41018 Query 154019 ATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTCC 154075 | | ||| ||||||||| || | ||| | ||| | || || | | || || Sbjct 41019 GAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCCC 41078 Query 154076 GCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCT 154135 |||||| || |||| ||| || | |||||| | || | | |||||| | || ||| | Sbjct 41079 GCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTT 41138 Query 154136 TGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGA--TGCACGTTA 154193 | | |||||||||| ||| | |||||| | ||| | | || || ||| Sbjct 41139 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGA-TGGAGCTG-ACGGCC 41196 Query 154194 ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATG 154253 ||||| || || ||| | | || || ||| ||||| | || || ||||||| Sbjct 41197 ACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATG 41256 Query 154254 CCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGC 154313 || |||||||| ||||| | | |||||| ||| || ||| || || || Sbjct 41257 CCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTG 41316 Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 || ||||| ||||||||||| ||||| || ||| | | || || | | Sbjct 41317 GTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGTTG 41376 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 ||||| |||||||| | ||||| || |||| || |||| | |||||||||||| Sbjct 41377 TACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGC 41436 Query 154434 ATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGG 154493 ||||||||||| || ||||| ||| | || |||||||| || || || ||| Sbjct 41437 ATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGG 41496 Query 154494 GTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCG 154545 || ||| | ||||| | ||||| |||||| | || | |||||||| Sbjct 41497 GTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGAAAATGATGGCCG 41548 >seq594 Length=47165 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 153640 TGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGAT 153699 |||||| |||||||| | ||| || |||||| |||||||| ||||| ||| ||||| | Sbjct 29790 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGT 29849 Query 153700 TGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 153740 |||| || | ||||| ||||| ||| |||||||||||||| Sbjct 29850 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGT 29890 >seq562 Length=198046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || |||| || | ||| | | | |||||||| || |||||||||||| Sbjct 185743 GCCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 185802 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || || || || || |||| | |||| || | ||| || || || || Sbjct 185803 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGG 185862 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| || || | | || | ||||||| | | ||| || Sbjct 185863 GATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGAC 185922 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || ||||| || ||||| ||||| ||||||||| Sbjct 185923 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATG 185971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496157210981040