Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq3008 190 2e-43 seq594 86.0 6e-12 >seq3008 Length=76608 Score = 190 bits (210), Expect = 2e-43 Identities = 989/1535 (64%), Gaps = 61/1535 (4%) Strand=Plus/Plus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| ||||||| | ||| ||||| |||| ||| || | | Sbjct 40012 AGGTCTTTGAGCAGATGGGGGTTGACTATCTGGAACTCCCCGGAGAGGACCCTGCGGGTG 40071 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | ||||||| ||||||||||| || || ||||| || || | Sbjct 40072 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 40131 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGA-ATCTTTTC 146222 || || ||||| ||||| ||||| ||| ||||||||||| ||| | ||||| || Sbjct 40132 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTG-CTTGGCGATCTTCTC 40190 Query 146223 CCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATG 146282 | || || || | |||| | | || ||||| | | | | ||||||| || Sbjct 40191 CTTCAGCA-GGCCCCAGTCCAGCA--GGTCGGTGGGCTTCTTCTCCCACATGTCGTACTG 40247 Query 146283 CATAGTGCCGCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-GG 146341 || |||| ||| | ||||| | |||||| || || || ||| | || || Sbjct 40248 CAGGATGCCCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCGA-GCTCGGCGG 40306 Query 146342 CCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGA 146401 |||| |||||||| || ||||| || | |||| | |||||| |||| ||| | Sbjct 40307 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCA 40366 Query 146402 CGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAG 146459 || ||| || || ||| ||| | ||| || || | || | ||||||||||| | Sbjct 40367 -GCAGCTGAGCTTCGGGGCTCTCGAACGGG-TAACGCATGAGGATGAAGGCGTCGGCCAA 40424 Query 146460 ACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT--ACTGTTCGCAGCGCCCGCA 146517 || || | |||| || | || ||||| | |||| ||| |||| | | ||| Sbjct 40425 GCCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGC-CTCGGGCA 40483 Query 146518 GTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAA 146577 || |||| |||| |||||||||||||||| | || |||| | ||| |||| Sbjct 40484 CCGG-ATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACG 40542 Query 146578 CGATTC-AGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGC 146636 | | | || | ||||||| || | | | ||||| || |||||| || Sbjct 40543 -GCTGCGAGTTTCTTAAAGTCAAAGGTCTGC---TCGGGGGTGACGTACATGTTGAGCGC 40598 Query 146637 GATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGC 146696 || ||||||| ||| || ||||| |||||| | | | || | || || || | Sbjct 40599 GACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTTCCGT 40658 Query 146697 GCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGG 146756 ||||||||||||| |||||||| |||||| ||| | ||||| || | ||||||||| Sbjct 40659 GCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGC 40718 Query 146757 GTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAA 146816 ||| ||||| |||||||| || ||||||||| | || ||||| |||| | Sbjct 40719 GTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATG--GCGTGC 40776 Query 146817 CAAATCT-CT-GGCCTTTACTTGTCTTTCGTACAGTTTATTCTTTTCGTATTTCTCGTAC 146874 || | || || || ||| || | | | | | ||| ||||| | ||| Sbjct 40777 CACAGCTGCTGGGACTTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAG 40836 Query 146875 AATATTTCAAA--ACTAGAACC-GTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAG 146931 | ||||||| || || | ||||||| || ||||| ||| |||||||| Sbjct 40837 AGCTTTTCAAACTCCTCCCCCCAGCACTCGTC---CAGCCCGGGGCACTCGTTGGGACAC 40893 Query 146932 AACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCA-AAG 146990 | || ||||| || | || || ||| || | ||| |||| ||||| ||||| | | Sbjct 40894 ATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATG 40953 Query 146991 GCCCAGCATCAAGTCGCGAGC-CTTGGCGTCCTCGGAGCCCATGTTGCGTC-TCAAGTTG 147048 || || | | ||| | || || || ||||| ||| |||| | || ||| | Sbjct 40954 GCGTAG-AAAAGGTCCCTGGCTCTCTGC-TCCTCCTTTCCCGTGTT-CTTCTTCAGCTCC 41010 Query 147049 AGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGC 147108 |||| ||| | | || ||||| ||||||| ||| ||||| ||||| || | Sbjct 41011 AGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTC 41070 Query 147109 ---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACG 147165 || |||||||| || |||| ||| || |||| ||| | || | || ||||| ||| Sbjct 41071 TTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACG 41130 Query 147166 AGGCCGCCGGATTT---TGTGGTGC---CGTTGTA--------TTGAGC-GCTGACGCTT 147210 || ||| ||| || |||||| || |||| | |||| | || ||| Sbjct 41131 AGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGGAGCT- 41189 Query 147211 TGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTC 147270 ||| || |||| || ||| | || || || | ||| ||| | |||||| Sbjct 41190 --GACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTG 41247 Query 147271 TTGTAGATGCCGTCGATGCTGTCTTCCTTGATGCATTGCAGGAAACACGAACACATTTGG 147330 | ||||||||| ||||||||||| ||||| ||| ||||||| || ||| || Sbjct 41248 TCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGT 41307 Query 147331 GGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTC 147390 || | |||||||| || || |||||| |||||| |||||| | | | Sbjct 41308 GGCCTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGAC 41367 Query 147391 ATCAATTGATACGTTTCAATGGCGCTCAT-AACGTCATCGCCGTGAATGGCCAGGGCGAC 147449 | || | ||||| || ||||| | | | | ||| |||| || | | || || Sbjct 41368 AGCAGGTTGTACGTCTCGATGGC-CGCGTCGATGTCCGTTTCGTGGATCCCGACGGACAC 41426 Query 147450 GCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCC 147509 |||||||||||||||||| || || || || | | | |||| || || || || Sbjct 41427 GCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTA-GG 41485 Query 147510 ATTGGT-CAGAGTTTTGAAACCAAAGTACTTGTAG 147543 || | | ||| || ||||| || ||| | |||||| Sbjct 41486 ATCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAG 41520 >seq594 Length=47165 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| || ||||| | ||| || |||||| | || ||| |||||| ||| | ||||| Sbjct 29792 TACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGTTG 29851 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| |||||||||||||||||||||| || ||||| Sbjct 29852 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGTGTACCAGTTTC 29901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475400011661680