Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3008 250 2e-61 seq594 89.7 5e-13 >seq3008 Length=76608 Score = 250 bits (276), Expect = 2e-61 Identities = 901/1399 (64%), Gaps = 34/1399 (2%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || |||||||||||||| | | || | |||| | Sbjct 41462 AAAGTGGCCGAGCGGCCGCAGCACATGCTCATGCGCGTGTCCGTCGGGATCCACGAAACG 41403 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| || | ||| || ||| | || |||| | | | ||||| ||||| Sbjct 41402 GACATCGACGCGGCCATCGAGACGTACAACCTGCTGTCGGAGAGGTGGTTCACCCACGCC 41343 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||||| | ||| ||| ||||| || ||| ||| |||| || || ||||| Sbjct 41342 TCCCCCACCCTCTTCAACGCGGGCACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTC 41283 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || ||||| || || ||| | ||||| | || Sbjct 41282 GCCATGAAGGACGACAGCATCGAGGGCATCTACGACACCTTGAAGCAGTGCGCCCTCATC 41223 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGT--GCACGA--CGTAAGAGGCCGCGGAAG 123193 ||||||| | ||| || || |||||| ||| || | | || || | || || Sbjct 41222 TCCAAATCAGCCGGGGGGATCGGCGTGGCCGTCAGCTCCATCCGCTCGACG----GGCAG 41167 Query 123194 CCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAA 123253 | |||| ||||| |||| | | || |||||||| ||||||| | |||||||| Sbjct 41166 CTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTAAGGGTTTACAA 41107 Query 123254 TAACGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTA 123310 ||| | | ||| |||| ||||||||||| || | | ||||| | || || || Sbjct 41106 CAACACGGCGCGTTACGTGGACCAGGGCGGGAACAAGAGACCCGGCGCTTTCGCCATGTA 41047 Query 123311 TCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || || || |||||| |||| |||| ||| || | | | || |||| ||| Sbjct 41046 CCTGGAGCCCTGGCACTTTGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGAAA 40987 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 ||| || ||| |||| | || | || ||||| | ||| | ||||| |||| ||| Sbjct 40986 GGAGGAGCAGAGAGCCAGGGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAA 40927 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 || || | | || | ||||| |||||||||||| | ||| ||||| || Sbjct 40926 GCGGGTGGAGAGCAACCAGGACTGGTCCCTCATGTGTCCCAACGAGTGCCCCGGGCTGGA 40867 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGC-----GCGAAGGC 123545 ||| | || | ||||||| || | ||| || |||||| | || ||| Sbjct 40866 CGAGTGCTGGGGGGAGGAGTTTGAAAAGCTCTACACGTCCTACGAGAAGGAGGGGAGGGC 40807 Query 123546 AAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTC 123605 || | | |||| || || ||| || | | || ||||| | || | Sbjct 40806 CAAGCGCGTGGTCAAGTCCCAGCAGCTG-----TGGCACGCCATCATCGAGTCCCAGACC 40752 Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 |||||||| ||||| |||||||| ||||||||||||||||||||||| | ||| || Sbjct 40751 GAAACCGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAG 40692 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCC 123725 || |||| || || || | || || || ||| | ||||| ||||||||| | | Sbjct 40691 AATCTGGGCACCATCAAGTCCAGCAACCTCTGCACGGAAATCGTCGAATACACCAGCCAC 40632 Query 123726 GATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGT-TGCGTCGAAAACG- 123783 || | || ||||| || || |||| ||| | ||| | | | | |||| || Sbjct 40631 GACGAGGTCGCCGTCTGCAACCTGGCCTCGGTC-GCGCTCAACATGTACGTCACCCCCGA 40573 Query 123784 ---GCGCTTTTAATTTCC-AAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTG 123839 | |||| | ||| |||| | || || | || ||| | || || || ||| Sbjct 40572 GCAGACCTTTGACTTTAAGAAACTCGCAGCCG--TGACCAAAGTAATCGTCAAAAACTTG 40515 Query 123840 AACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAA 123899 ||||| || ||||| | || || ||||| || || || ||| || | Sbjct 40514 AACAAGATCATCGACATCAACTTCTATCCGGTGCCCGAGGCCGAAAAGTCCAACAGGCGC 40455 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 ||| | ||| | ||| | ||| | ||||| ||||||||||| || | | |||| Sbjct 40454 CACCGGCCGATAGGAATCGGCGTGCAAGGCTTGGCCGACGCCTTCATCCTCATGCGTTAC 40395 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 |||| ||| ||| |||||| || |||| || ||||| || ||| || | || ||| Sbjct 40394 CCGTTCGAGAGCCCCGAAGCTCAGCTGCTGAACACGCAGATCTTCGAGACCCTCTACTAC 40335 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 | ||| |||||||||||||||| || || | |||| | ||||| | |||||| Sbjct 40334 GCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCG 40275 Query 124080 GGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAAT 124139 ||| |||| | ||||| || || ||||||||||||||||| | | || || | Sbjct 40274 GGCTGCCCCGTCAGCCGGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGCCCACCGAC 40215 Query 124140 TTGTGGGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGC 124197 || ||||||| || | | || | | | |||| | |||||| || | ||| | Sbjct 40214 CTGCTGGACTGGGGCCTGCTGAAGGA--GAAGATCGCCAAGCACGGCGTGAGGAACAGCC 40157 Query 124198 TGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCT 124257 || || ||||| ||||| ||||| |||| || || || | || |||||||| ||| Sbjct 40156 TGCTGCTGGCGCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 40097 Query 124258 TCGAGCCGTTCACTAACAA 124276 ||||||| | ||| | ||| Sbjct 40096 TCGAGCCCTACACCAGCAA 40078 >seq594 Length=47165 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || || ||||||||||||||||| ||||||||||||||||| | ||| ||| Sbjct 29901 GAAACTGGTACACCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGCAG 29842 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA 123717 || |||| || ||||||| || ||||| ||| | || || | || |||| Sbjct 29841 AATCTGGGCACCATAAAATCCAGCAATCTGTGCACAGAGATCGTAGAGTACA 29790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451907392271720