Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq3685 113 7e-20 seq1768 91.5 2e-13 >seq3685 Length=125217 Score = 113 bits (124), Expect = 7e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || ||||||| || || ||| || ||||||||||| || ||||||||| || Sbjct 19208 GCGGTGTTGACGATGTTGAAGCCCACGCTGCCTCCGAAGGTGCTCGGCTTCCAGTACTCC 19267 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| |||| | || || | ||| || || ||||||| ||| | Sbjct 19268 GGGGAGCAGATGGGGTTTCCCATTAAGCCCTTGAGGGAGAAAGGGGCCCCCATCTCCACC 19327 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || |||| |||||||| || | | | || || || || | | || | |||||| Sbjct 19328 ATAGTCTCCCCGAAGATTGCGTCTGTCCTGGGCTTCTCCACCAACAGACCCGGGTAGAGC 19387 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || |||| || |||| | |||| || || ||||| ||||| ||| Sbjct 19388 TCCACAGCGTCAACGTGTCCGTAGAACTCCTCCAGAATTGCGGCCATCTCTTTCTCTCCT 19447 Score = 100 bits (110), Expect = 4e-16 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 9754 TCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTC 9813 ||||| |||| |||||||| | | || || ||||| || || ||||||||||| ||| Sbjct 21066 TCGTCGTCCCAGTCCGGGTGAACCTCCTTCAGCACATCACACACTCTGTTGTGTTCCCTC 21125 Query 9814 AGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAACACTTCATTCCCCACT 9873 ||||| ||||||||||||||||| | || || || | || || | || | ||||| Sbjct 21126 AGCCAGATGGTGGCGTACATCATCAGCCCGGGGACCAGGCCGAAGGCCTCGTGGCCCACA 21185 Query 9874 GCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT--GCACCTGGGTCTCTT 9931 |||||||| || ||||| || | ||| | || |||| | || ||| ||||| Sbjct 21186 GCAAAGCGGTGAGAGTCGGGAACGTGGGGAGGGTAGTGCATTTCGGCGCCT--ACCTCTT 21243 Query 9932 TGACGGTGGGGGGATACA 9949 |||| || || || |||| Sbjct 21244 TGACTGTTGGTGGGTACA 21261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/260 (69%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || |||||| | |||||||| || || | | | | || ||||||| | | Sbjct 20252 CCGGCCAGCGATCTGTTTGGTGAACGACTCCACGAGGTTGCCGATGCCGTGCTCGGGAAC 20311 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 | ||| ||||| | ||||| | || ||| | || | | || | ||| | || Sbjct 20312 TAGGGAGGTGTTGAAGACGAATTCTTTGTAGCTGTAATCCTTCTCCTCAATGTGGAAGCT 20371 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| |||| | ||| |||||||| | || || |||||||| Sbjct 20372 GTCAGGCATCAGCGGGTGCCAGTGGTACAAGGTGTTGAACTCTGATGCAATGCGGTTCTG 20431 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| ||| || | ||| || ||||| | |||| ||||| || Sbjct 20432 GTACTGGAAGCGCTGGT--TGAAAAGCAGCTCGGGATCAAACTTGAGCTTGAAGTTATAG 20489 Query 9670 CCGCTGAGTTGCTGGACATA 9689 ||||| || ||||| || || Sbjct 20490 CCGCTCAGGTGCTGCACGTA 20509 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 |||||| || || | || || |||||||| || || || || || || | |||| Sbjct 22023 TCACCTACTACTCCCATCGGGGTTGGGCAGTCCTCCGGCACAGGGGGGAGGGTGCGCGTA 22082 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || ||| ||||||||||| | ||||| ||||| ||| |||||| | Sbjct 22083 TAGTAGGAGAGGTTTGAATATGCTTCCCAGTTTTTGTAACCATAGTCTGCATTGTAGGTC 22142 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 22143 GGAGGACTATCAATCA 22158 >seq1768 Length=121181 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || |||||||||||||| ||||||||| | |||||||| ||| ||| |||| || Sbjct 55328 TCTCCCCCGAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAAATGGGGTTTCCCATCAGG 55387 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGA--AGATGGCACCGG 9080 ||||| | || || ||||| |||| ||| | || ||||| || | |||| | | Sbjct 55388 CCTTTTAGCGAGAAGGGAGCGCCCATCTCCACCATACTCTCGCCAAATAGATTG--TTAG 55445 Query 9081 GACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGA 9140 | |||| ||| || | | || ||||| ||||| || | ||| || | ||| || |||| Sbjct 55446 GGCGCGTTTTCTCCAGCAGGATGCCAGGGTAGAACTCCAGAGCATCTATGTCTCCGTAGA 55505 Query 9141 G 9141 | Sbjct 55506 G 55506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723574596803800