Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3008 178 2e-39 seq594 98.7 1e-15 >seq3008 Length=76608 Score = 178 bits (196), Expect = 2e-39 Identities = 894/1395 (64%), Gaps = 52/1395 (4%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| ||||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 40072 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 40131 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 40132 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 40191 Query 116023 TTGAGGGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080 || || | ||||||| | || | | | | || | ||||||||| || |||| | Sbjct 40192 TTCAGCAGGCCCCAGTCCAGCAGGTCGG--TGGGCTTCTTCTCCCACATGTCGTACTGCA 40249 Query 116081 GGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138 |||| || || |||| ||| | ||| | | ||||| || ||||| | | || Sbjct 40250 GGATGCCCCGGCTGACGG-GGC-AGCCCGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGC 40307 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 || ||| |||||||||| ||||| |||| || | ||||| || || | | |||| Sbjct 40308 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAG 40367 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258 || || ||| | || |||| | ||| | || || | || || | || Sbjct 40368 CAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAGCC 40427 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CAC 116315 ||| || |||| || || || || || | | | || |||||| ||| ||| ||| Sbjct 40428 TTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTT---CGGCCTCGGGCAC 40484 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 ||||| || || | ||||| | | | || | |||||| || || || || | | Sbjct 40485 CGGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGC 40544 Query 116376 ATGAAGCTTTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 116433 || |||| ||| ||||| | | ||| |||| ||| | || ||| Sbjct 40545 TGCGAG--TTTCTTAAAGTCAAAGGTCTG---CTCGGGGGTGACGTACATGTTGAGCGCG 40599 Query 116434 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTA 116493 | || ||||| || || || | | ||| || | ||||| || | |||||||| Sbjct 40600 ACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTTCCGTG 40659 Query 116494 CACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551 || | || || ||| | |||||||||| |||| || || ||| |||| || | Sbjct 40660 CAGAGGTTGCTGGACT--TGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGG 40717 Query 116552 CATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 116611 | || ||||| ||||| |||||||| || || || || ||||||| || || || | || Sbjct 40718 CGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCC 40777 Query 116612 ATACAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 | | | | | | || | || || ||||| | |||||||| |||||| |||||| Sbjct 40778 ACAGCTGCTGGGACTTGACCACGCGC-TTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAG 40836 Query 116671 AGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 || |||||||| || ||| |||| ||| ||||| || || | ||||| | Sbjct 40837 AGCTTTTCAAACTCCTCCCCC-CAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACAT 40895 Query 116730 GAGAGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 116787 ||| ||||| | || | ||| |||||||||||||| ||||| |||||||| | Sbjct 40896 GAGGGACCAGT--CCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATG 40953 Query 116788 GCCGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 116846 || |||| || |||| | | ||| || | | ||| || || || ||||| Sbjct 40954 GCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTCAGCTCCAG 41012 Query 116847 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTT 116900 ||||| | | || |||||| || |||||||||| |||| | || ||| Sbjct 41013 GAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTT 41072 Query 116901 GCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAAT 116960 | || |||||| || || | |||||| ||| | || | ||||| || | Sbjct 41073 G---TTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGAC 41129 Query 116961 GATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACATCGT 117019 || || | || | ||| || || || ||| | | | | | | || | Sbjct 41130 GAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCG-TCGAGCGGATGGAGC 41188 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 || | || || || ||||| || | || ||||| | ||||||| | | | || Sbjct 41189 TGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGT 41248 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTG 117139 ||||||| || ||||| ||| |||| | |||| ||||||||||| |||| |||| Sbjct 41249 CGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTG 41308 Query 117140 GCC--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGG 117196 ||| |||||| || |||||||||||||| || | |||||| ||||| |||| | | Sbjct 41309 GCCTGTTGGTG--CCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAC-CACCTCTCCG 41365 Query 117197 ACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGA 117256 ||| | | ||| ||||| | | | | | ||||| |||| || |||| || | Sbjct 41366 ACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACA 41425 Query 117257 CCCGCATAAACATGT 117271 | ||||| | ||||| Sbjct 41426 CGCGCATGAGCATGT 41440 >seq594 Length=47165 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 28794 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTTCCCAGGATCTGGGCGGTGGAA 28853 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| || ||||| Sbjct 28854 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 28885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613377159480120