Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3008 185 1e-41 seq594 84.2 3e-11 >seq3008 Length=76608 Score = 185 bits (204), Expect = 1e-41 Identities = 488/733 (67%), Gaps = 28/733 (4%) Strand=Plus/Plus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || ||||| || ||||| | ||| | | |||| | |||| || ||| ||||| | Sbjct 40645 TCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTC 40704 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002 || | ||| |||| ||| ||||||| |||| | ||| | ||| | || |||| || ||| Sbjct 40705 TTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCG 40764 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGA 205059 || | | | ||||| | | | || |||| |||| | | |||| | Sbjct 40765 ATGATGGCGTG-CCACAGCTGCTGGGACTTGACCACGCGCTTGGC---CCTCCCCTCCTT 40820 Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGG 205116 |||||| ||||| ||| |||| || || | || |||||| |||| || Sbjct 40821 CTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCGGG 40877 Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176 || | ||||||||||| || ||||| ||| | | | ||||| || ||| ||||| Sbjct 40878 GCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAG 40937 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236 |||| |||||||| | |||| || || || | ||| || | || | ||| ||| Sbjct 40938 GTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTT 40997 Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 ||| |||| ||||| ||| || | | ||| |||||| ||||| | ||| ||| | Sbjct 40998 CTTCTTCAGCTCCAGG-AAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGA 41056 Query 205296 TTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTC 205355 ||||| || ||||||||||| ||||||||||| || | | | |||| |||| | Sbjct 41057 AAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCC 41116 Query 205356 GCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG--GCCGAGCCTTC 205413 ||||| || || || ||||||| | | ||||| |||| | |||| || | | | Sbjct 41117 TTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCG 41176 Query 205414 AGCCCTCACGTTGGA---GATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGC 205470 ||| | |||| || |||| |||| ||||| || | | |||| ||| |||| Sbjct 41177 AGC-----GGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGC 41231 Query 205471 GCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATA 205530 ||||| | || ||| ||||||||| ||||| |||||| || | | ||| | Sbjct 41232 GCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 41291 Query 205531 GCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGC 205589 ||| | ||||| |||| |||||||||||||| |||||| |||||| ||||||| Sbjct 41292 GCAGCTGGACAGCTGTGGC-CTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGG 41350 Query 205590 TGAAGCGCTTCTC 205602 |||| | | |||| Sbjct 41351 TGAACCACCTCTC 41363 Score = 174 bits (192), Expect = 2e-38 Identities = 349/509 (69%), Gaps = 9/509 (2%) Strand=Plus/Plus Query 204100 CCTGATCG-AGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| || | ||||||| | ||||| || || ||||||| ||||| |||| Sbjct 39944 CCTGAACGGACCCGTTGTGACCGATCAGCTGGTTCTTCATCTCCTCGTTCCACA-GCCCC 40002 Query 204159 ACCTGA-TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACC 204217 || | |||| || | ||| |||||||||| ||||| || || ||||| || ||| Sbjct 40003 CTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTGACTATCTGGAACTCCCCGGAGAGGACC 40062 Query 204218 CCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGA 204277 | |||||| | | |||| ||||| | || |||| | |||||||||||| | ||||| Sbjct 40063 CTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGG 40122 Query 204278 GCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGG 204337 |||||| |||||||||||| || ||||| |||||| ||| | ||| |||| || | Sbjct 40123 GCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCG 40182 Query 204338 ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397 | | | |||||| | |||||| ||| | |||| ||| ||||||||||| Sbjct 40183 ATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGGTCGGTGGGCTTCTTCTCCCACATGTCG 40242 Query 204398 AACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTC 204456 |||| | |||||| | ||||| |||| |||| ||||||| || ||| || ||| Sbjct 40243 TACTGCAGGATGCCCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCGA-GCTC 40301 Query 204457 TTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAAC 204516 | ||||||| ||| || ||| |||| ||||| | |||||| |||||||| Sbjct 40302 GGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGT 40361 Query 204517 GTTTA--ATCTGGCGGCCTCCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCC 204574 ||| | | ||| || || | | || |||| || || | | || |||| Sbjct 40362 GTTCAGCAGCTG--AGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCG 40419 Query 204575 GCCAAGCCCTGCACTCCGATTCCCAACGG 204603 |||||||| ||||| |||||||| | ||| Sbjct 40420 GCCAAGCCTTGCACGCCGATTCCTATCGG 40448 Score = 111 bits (122), Expect = 3e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | ||||||| |||||| || || ||||| ||||| Sbjct 39643 CCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGTT 39702 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 ||| |||||||| ||||| ||||| |||||| || || || ||||| |||| ||||||| Sbjct 39703 CAGCGACTGGCTCTGGTCAATGAA-GGCGCCGCGGTCAGCCGCCATCTTGAGTATGGTCT 39761 Query 204036 TCTGCGAAATCTCCCACACCGTCTTGAACA 204065 |||| || || ||||| || || ||| ||| Sbjct 39762 TCTGGGAGATTTCCCAGACGGTTTTGTACA 39791 >seq594 Length=47165 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | | || | Sbjct 28759 TGACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAA 28818 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||| ||||| || | ||||| |||||| || ||||||||||| |||| ||||| Sbjct 28819 TGGACTCATTGTTTCCCAGGATCTGGGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCA 28878 Query 204312 G 204312 | Sbjct 28879 G 28879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794986656915920