Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq562 140 8e-28 seq3666 89.7 1e-12 >seq562 Length=198046 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 188460 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 188519 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || || ||||| || Sbjct 188520 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 188579 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| |||||| || Sbjct 188580 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGT 188639 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || |||||||| || || Sbjct 188640 CTTGCCAGTGAGGGTCTTCACAAAGATCTG 188669 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 185758 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 185817 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || || ||||| || Sbjct 185818 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATC 185877 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || || | ||||| || Sbjct 185878 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGT 185937 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 185938 CTTGCCAGTGAGGGTTTTCACAAAGATCTG 185967 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| ||||||||| | | || | ||||| Sbjct 188916 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 188975 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || || ||||| || Sbjct 188976 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 189035 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| |||||| || Sbjct 189036 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGT 189095 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || |||||||| || || Sbjct 189096 CTTGCCAGTGAGGGTCTTCACAAAGATCTG 189125 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| ||||||||| | | || | ||||| Sbjct 189144 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 189203 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || || ||||| || Sbjct 189204 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 189263 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| |||||| || Sbjct 189264 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGT 189323 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || |||||||| || || Sbjct 189324 CTTGCCAGTGAGGGTCTTCACAAAGATCTG 189353 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || |||||||| |||| |||||| || | | || | ||||| Sbjct 185302 CAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTATTCGGAGAGGGTGCGGCCATC 185361 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || || ||||| || Sbjct 185362 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATC 185421 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| |||||| || Sbjct 185422 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGT 185481 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 185482 CTTGCCAGTGAGGGTCTTCACGAAGATCTG 185511 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| ||||||||| | | || | ||||| Sbjct 185530 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 185589 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || || ||||| || Sbjct 185590 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 185649 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| |||||| || Sbjct 185650 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGT 185709 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || |||||||| || || Sbjct 185710 CTTGCCAGTGAGGGTCTTCACAAAGATCTG 185739 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| ||||||||| | | || | ||||| Sbjct 188688 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 188747 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || || ||||| || Sbjct 188748 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 188807 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || |||| |||||| || Sbjct 188808 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGT 188867 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || ||||| || || || Sbjct 188868 CTTGCCAGTGAGGGTCTTCACGAAGATCTG 188897 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| ||||| || || ||||| |||| ||||||||| | | || | ||||| Sbjct 189372 CAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 189431 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | |||||| || || || ||||| || Sbjct 189432 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATC 189491 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| |||| |||||| | | || || || | ||||| || Sbjct 189492 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGT 189551 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 189552 CTTGCCAGTGAGGGTTTTCACAAAGATCTG 189581 >seq3666 Length=100071 Score = 89.7 bits (98), Expect = 1e-12 Identities = 69/81 (85%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||||| || |||| |||||| || |||||||| || |||||| Sbjct 18988 CCTTTCTGGATGTTGTAGTCAGACAGTGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAG 19047 Query 199499 ATGAGACGCTGCTGGTCCGGA 199519 || ||||||||||| |||||| Sbjct 19048 ATCAGACGCTGCTGATCCGGA 19068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178665465651119