Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq562 154 1e-32 seq14194 107 2e-18 seq14193 107 2e-18 >seq562 Length=198046 Score = 154 bits (170), Expect = 1e-32 Identities = 176/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || || || ||||| ||||| ||||| ||||||||| | || |||||| Sbjct 189589 AAAATATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGC 189530 Query 38299 CCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 ||| ||||| | | | |||| | || | || |||| || || || || || ||| | Sbjct 189529 CCAGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCA 189471 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || || ||| |||| || | || ||||| |||||||| || | ||||||||| |||| Sbjct 189470 GATCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAC 189411 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| |||||| | || || ||| | ||||||||| |||| || ||| Sbjct 189410 TACAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 189357 Score = 145 bits (160), Expect = 8e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 38239 AAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGG 38298 |||| ||||| || || || ||||| ||||| ||||| ||||||||| | || |||||| Sbjct 185975 AAAACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGC 185916 Query 38299 CCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 ||| ||||| | | | |||| | || | || |||| || || || || || ||| | Sbjct 185915 CCAGCGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCA 185857 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || || ||| |||| || | || ||||| |||||||| || | ||||||||| |||| Sbjct 185856 GATCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAC 185797 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| ||||| | || || ||| | |||||||| |||| || ||| Sbjct 185796 TACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGGC 185743 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| ||| | Sbjct 188900 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188841 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | || || Sbjct 188840 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 188782 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 188781 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 188722 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || ||| | ||||||||| |||| || ||| Sbjct 188721 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 188673 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| | || |||||| ||| | Sbjct 185742 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185683 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | || || Sbjct 185682 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 185624 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 185623 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 185564 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || ||| | ||||||||| |||| || ||| Sbjct 185563 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 185515 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| | || |||||| ||| | Sbjct 189128 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189069 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | || || Sbjct 189068 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 189010 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 189009 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 188950 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || ||| | ||||||||| |||| || ||| Sbjct 188949 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 188901 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| | || |||||| ||| | Sbjct 189356 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189297 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | || || Sbjct 189296 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 189238 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 189237 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 189178 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || || ||| | ||||||||| |||| || ||| Sbjct 189177 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 189129 Score = 132 bits (146), Expect = 5e-26 Identities = 164/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || |||||| ||| | Sbjct 185514 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185455 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | || || Sbjct 185454 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCA 185396 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||| ||||| Sbjct 185395 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAATACAA 185336 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464 |||||| ||||| | || || ||| | ||||||||| |||| Sbjct 185335 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAG 185294 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| ||||| |||||||| | || |||||| ||| | Sbjct 188672 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188613 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || || ||| | || || Sbjct 188612 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCA 188554 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 188553 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 188494 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | |||||||| |||| || || Sbjct 188493 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGG 188446 >seq14194 Length=7087 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| |||| || ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 4133 GCTC-ACCAAGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGAG 4191 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| ||||| | ||| |||| |||||||| || |||||||||||| | Sbjct 4192 AGATGAAGAACCGCTCTTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGAT 4251 Query 133394 CCACCT 133399 |||||| Sbjct 4252 CCACCT 4257 >seq14193 Length=36040 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| |||| || ||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 32542 GCTC-ACCAAGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGAG 32484 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| ||||| | ||| |||| |||||||| || |||||||||||| | Sbjct 32483 AGATGAAGAACCGCTCTTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGAT 32424 Query 133394 CCACCT 133399 |||||| Sbjct 32423 CCACCT 32418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500066782122880