Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2666 187 2e-41 seq512 116 3e-20 >seq2666 Length=112169 Score = 187 bits (206), Expect = 2e-41 Identities = 927/1462 (63%), Gaps = 18/1462 (1%) Strand=Plus/Plus Query 517257 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 517316 |||| | |||||| ||||| || |||||||||| || |||||||| |||| ||| || | Sbjct 109927 CGGCGGACACATTTAGAATGCCGTTGGCATCCACGTCGAATGTGACCTCAACTTGTGGTA 109986 Query 517317 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 517376 ||||||| |||| || ||||| || | || ||| | |||| || || || | Sbjct 109987 CCCCTCTGGGAGCGGGAGGGATACCAGTGAGATCAAACTTGCCCAAGAGGTTGTTGTCCT 110046 Query 517377 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 517436 | || | | || ||||| | | || || || | | ||||| ||||||| Sbjct 110047 TGGTCATGGCCCTCTCGCCCTCATACACCTGAATCAGCACACCTGGCTGATTGTCTGAAT 110106 Query 517437 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || | || | ||||| | | || | || || || ||||||| | || | Sbjct 110107 ATGTGGAGAAGA-TCTGGGTCTGCTTGGATGGGATGGTGGTGTTTCGTTTGATTAGCGGC 110165 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||||| || || || || || | || ||||| || |||| ||||| | || | Sbjct 110166 GTCATAACCCCGCCGGCCGTCTCAATGCCCAGAGACAGTGGAGCCACATCCAGCAGCAGC 110225 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||| | || || || | || | || || || || || | || || || Sbjct 110226 AGATCTTGGACGTTCTCTGAGGTGTCCCCCATGAGGATGGCGGCCTGGACCGCTGCGCCG 110285 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || || ||||||||||| || || | | | || |||| | ||||| ||||| | | Sbjct 110286 TACGCCACAGCTTCATCCGGGTTGATGCTCTTGTTCAGTTCTCGGCCATTAAAAAAGTCT 110345 Query 517676 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || || | ||| | || ||||| | | ||| || ||||||| ||||||||||| Sbjct 110346 TGTAGGAGCT-TCTGGATTTTGGGAATTCTTGTTGAGCCGCCAACTAGGACAATTTCATG 110404 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | || |||||||||||| || | ||| | | || || || || || || | Sbjct 110405 GATCTTTGATTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCCACTGGCTCCAGTGTTCC 110464 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 517852 || || | ||||| || || || || || || || || || | || || Sbjct 110465 CCTGAAGAGCTCTGAGTTGAGCTCCTCAAACCGTGCCCTGGT--GATGGAGGTGTAGAAG 110522 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 || || || ||||||| ||| || | ||||| | | || || || ||||| | Sbjct 110523 TCGATGCCCTCGAACAGAGAGTCGATCTCAATGCTGGCCTGGGTGCTGGAGGATAGGGTC 110582 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA 517972 | || || | ||||| || || | ||||| | | ||| | || |||| | | Sbjct 110583 CTCTTTGCTCTCTCACAAGCAGTACGCAGTCTCCTCACTGCTCT--CTTATTGCCGCTGA 110640 Query 517973 TCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 | | || ||| |||||| ||||| || || ||| | | || | || || |||| Sbjct 110641 TGTCCTTCTTATGTTTTCTTTTGAACTCCTCCACAAAGTGGTTGACCATCCGGTTGTCAA 110700 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 | || || || || | | || | ||||| || ||| | || | || | ||||| | Sbjct 110701 AGTCCTCCCCGCCAAGGTGCGTGTCTCCTGCGGTGGCTTTCACCTCAAAGATGCCATCCT 110760 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | || | | || || ||| || ||||| | ||| || || || ||||| Sbjct 110761 CAATGGTCAGGATGGACACGTCGAAGGTGCCTCCACCGAGATCGAAGATGAGCACATTGC 110820 Query 518151 TTTCTTTGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 ||| |||| || || || || || || || | || || || || || || | Sbjct 110821 GCTCTCC-TCTT--TTACCCTTGTCCAGGCCGTAGGCGATGGCTGCCGCCGTGGGCTCGT 110877 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 | || || |||| |||||| ||||| | || || |||||||| |||||||| || | Sbjct 110878 TGATGATCCTCAGAACATTCAGACCCGAGATCACCCCGGCATCTTTGGTGGCTTGCCTCT 110937 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATAT 518327 | || || || ||||| || ||||| || || || |||| | || | | || | | Sbjct 110938 GGGAGTCATTGAAATAAGCCGGAACTGTGATGACTGCATTCGACACACCCTGTCCCAGGT 110997 Query 518328 AAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAAT 518387 | || || | | ||||||||| | | ||| || || |||| || ||| | Sbjct 110998 AGGCCTCAGCAATCTCCTTCATTTTAACAAGGACCATGGAGGAGATTTCCTCCGGGTAGA 111057 Query 518388 ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447 | ||||| || || ||| || | | | ||||| | | | | || | Sbjct 111058 AGGCCTTGGTCTCCCCTTTATAGTCCACCTGGACTTTGGGTTTTCCATTATCGCTGATCA 111117 Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507 | || || |||||| |||||| || || || || ||| ||||| | ||| |||| Sbjct 111118 CCTTGAAAGGCCAGAGTTTCATGTCGGACTGGACGACGGCGTCGTTAAACTTTCTCCCAA 111177 Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567 | | || || |||||||| || || ||||| ||||| || || |||| | ||||| | Sbjct 111178 TGAGCCGCTTGGCATCAAAGATGGTGTTGGTGGGATTCATGGCGACTTGGTTCTTGGCAG 111237 Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627 |||||||||| || ||||| ||||| || | || || ||||| || | || | Sbjct 111238 CATCTCCAATGAGCCTCTCTGTGTCTGTGAAGGCCACGTAGCTGGGAGTGGTCCTGTTTC 111297 Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 | || || || || || || || ||||| |||| || | ||||| |||||| | | | Sbjct 111298 CCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACACCAACACAAGAATAGG 111357 Query 518688 TTGTTCCTAAATCAATACCAAT 518709 | || || | ||| || ||||| Sbjct 111358 TGGTGCCCAGATCGATGCCAAT 111379 >seq512 Length=435775 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || || ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 260520 TTCTTGTCCAGTCCATAGGCAATAGCAGCAGCAGTTGGTTCATTGATTATACGCAGGACA 260461 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| |||| | || ||||| || ||||| || || || |||||||| || || Sbjct 260460 TTGAGGCCAGAAATTGTCCCAGCATCCTTTGTGGCCTGCCTCTGGGAATCGTTGAAGTAA 260401 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || ||||||| ||||||| Sbjct 260400 GCGGGCACAGTAACCACGGCAT 260379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779980937803642