Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3008 147 3e-30 seq14194 84.2 3e-11 seq14193 84.2 3e-11 >seq3008 Length=76608 Score = 147 bits (162), Expect = 3e-30 Identities = 647/1010 (64%), Gaps = 37/1010 (4%) Strand=Plus/Minus Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 || || |||| ||| | ||||| || || || ||||||||| | || |||||| | Sbjct 40967 GACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGCGGGT---GGAGAGCAAC 40911 Query 112149 AAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGA 112204 | ||||| ||| | ||||| || || ||||| || ||| ||| | ||| || Sbjct 40910 CAGGACTGGTCCCTCATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GA 40852 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACT-GCGACG---- 112259 |||||||||| |||||||| |||||| | || | |||| | ||| | Sbjct 40851 GGAGTTTGAAAAGCTCTACACGTCCTACGAGAAGGAGGGGAGGGCCAAGCGCGTGGTCAA 40792 Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 || ||||| || ||||| | || || || |||| || ||||| || || || ||| Sbjct 40791 GTCCCAGCAGC-----TGTGGCACGCCATCATCGAGTCCCAGACCGAAACCGGCACGCCA 40737 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 || ||||| |||||||||||||| ||| ||||| || || ||||| |||| ||| Sbjct 40736 TACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAGAATCTGGGCACCATC 40677 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 ||| ||||||||| || |||||| | |||| || | | || ||| || || Sbjct 40676 AAGTCCAGCAACCTCTGCACGGAAATCGTCGAATACACCAGCCACGACGAGGTCGCCGTC 40617 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499 || ||||| || || |||| ||| || ||| || || ||| |||| ||||| Sbjct 40616 TGCAACCTGGCCTCGGTCGCGCTCAACATGTACGTCACCCCCGAG---CAGACCTTTGAC 40560 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | | |||||| | || || ||| || |||||| | |||| | || || Sbjct 40559 TTTAAGAAACTCGCAGCCGTGACCAAAGTAATCGTCAAAAACTTGAACAAGATCATCGAC 40500 Query 112560 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAA-TCTAATATGAGACACCGTCCAAT 112615 | || || || || || ||| | || ||| || || | | | ||||| || || Sbjct 40499 ATCAACTTCTATCCGGTGCCCGAGGC----CGAAAAGTCCAACAGGCGCCACCGGCCGAT 40444 Query 112616 TGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTC 112675 || |||| || ||||| | || || | ||||| || || || | || || Sbjct 40443 AGGAATCGGCGTGCAAGGCTTGGCCGACGCCTTCATCCTCATGCGTTACCCGTTCGAGAG 40384 Query 112676 CGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA 112735 | |||||| || | || ||| || || ||||| | || ||||||| || || Sbjct 40383 CCCCGAAGCTCAGCTGCTGAACACGCAGATCTTCGAGACCCTCTACTACGCCGCCCTGGA 40324 Query 112736 GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 112795 |||||| | ||| |||| | | || || || || || | | ||| || | | Sbjct 40323 GGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCGGG--CTGCCCC 40266 Query 112796 TTCACAAGGGG--TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTAC--G 112851 ||| |||| | || || | || ||||||| || || || | | | || | | Sbjct 40265 GTCAGCCGGGGCATCCTGCAGTACGACATGTGGG-AGAAGAAGCCCACCGAC-CTGCTGG 40208 Query 112852 ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGG 112911 |||||| | || ||||| ||| || | || | | ||||| || || ||| Sbjct 40207 ACTGGGGCCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGG 40148 Query 112912 CACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 112971 | || ||||| || ||||||||||| || ||| |||| || || || | | | || |||| Sbjct 40147 CGCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGCCCT 40088 Query 112972 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 113031 |||| | |||||||| | || |||| | || ||||| ||| |||||| | Sbjct 40087 ACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGAGTTCCAGATAGTCAACCCCC 40028 Query 113032 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 |||| | | ||||| | |||| || || ||| | |||| |||||| Sbjct 40027 ATCTGCTCAAAGACCTGACTGAGAGGGGGCTGTGGAACGAGGAGATGAAG 39978 >seq14194 Length=7087 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 3603 GTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGGC 3544 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || |||||||||||||| ||| | ||||||| Sbjct 3543 CTGATGCCCGGCCTGACTTTCTCCAACGAGCTGATCAGCAGAGACGAGG 3495 >seq14193 Length=36040 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 33072 GTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGGC 33131 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || |||||||||||||| ||| | ||||||| Sbjct 33132 CTGATGCCCGGCCTGACTTTCTCCAACGAGCTGATCAGCAGAGACGAGG 33180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620610825889040