Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3008 159 4e-34 seq594 91.5 2e-13 >seq3008 Length=76608 Score = 159 bits (176), Expect = 4e-34 Identities = 948/1492 (64%), Gaps = 58/1492 (4%) Strand=Plus/Plus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | || || |||| ||||| |||||| Sbjct 39978 CTTCATCTCCTCGTTCCACAGCCCCCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTGAC 40037 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||| || | |||| || | |||||||| | |||||||| || | Sbjct 40038 TATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 40097 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 40098 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGCAG 40157 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 106078 ||||| | | || | | ||| ||||| || | ||||||| | || | Sbjct 40158 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGGTC 40217 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGG--GACGTGGGAGAAC 106136 | | || ||| || ||||||| || | || || | || || |||| || || | Sbjct 40218 GG-TGGGCTTCTTCT-CCCACATGTCGTACTGCAGGATGCCCCGGCTGACGGGGCAG--C 40273 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 || | | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 40274 CCGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 40333 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 ||| || | ||| || ||||| | | |||| | || ||||| || || | Sbjct 40334 CGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTCTCGAACG 40393 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || | || || | || || | ||||| || || | || || || | || Sbjct 40394 GGTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGT 40453 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 106373 | ||| | || |||||| || ||| || ||||| || || |||| |||| Sbjct 40454 GGCGCCTGTTGGACTTTTCGGC---CTCGGGCACCGGATAGAAGTTGATGTCGATGATCT 40510 Query 106374 GGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAG 106430 ||| | |||||| || || ||||| | | | ||||| | | | ||||| | Sbjct 40511 TGTTCAAGTTTTTG---ACGATTACTTTGGTCACGGCTGCGAGTTTCTTAAAGTCAAAGG 40567 Query 106431 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 106490 | | ||| |||| ||| | || |||| || |||| ||||| || || Sbjct 40568 TCTG---CTCGGGGGTGACGTACATGTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGA 40624 Query 106491 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCC 106550 ||| || | ||||| || | ||||| || || | |||| ||| || || | Sbjct 40625 CCTCGTCGTGGCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGC 40684 Query 106551 CCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 106610 ||| ||||| ||||| ||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 40685 CCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGC 40744 Query 106611 CCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCG 106669 | || || ||||| |||| || || || | ||||| | | | | || | || || Sbjct 40745 CGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCTGCTGGGACTTGACCACGCGC- 40803 Query 106670 TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG 106729 ||||||| |||||| |||||| |||||||| |||||||||||| ||| | || Sbjct 40804 TTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCC-CAGCA 40862 Query 106730 -TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCA-- 106786 ||| || || || || || ||||| | || ||||| | || | ||| Sbjct 40863 CTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGACCAGT--CCTGGTTGCTCTCC 40920 Query 106787 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 106846 |||||||||||||| ||||| || ||||||| || | || || || || | | Sbjct 40921 ACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGC 40980 Query 106847 TCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGG 106905 || || | || ||| || | | ||| ||||| || | | || |||||| || Sbjct 40981 TCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGG 41039 Query 106906 CTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCG 106961 ||| || || | |||| || || || | | ||| | || | || || |||| Sbjct 41040 CTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTG-TTCCCGCCCTGGTCCACGTAACGCG 41098 Query 106962 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 107021 | ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 41099 CCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCC-- 41156 Query 107022 GAATACGAGATTTA-TTGGCTCTC-ACATCATGGATGTG-----CATCCCAATACCCCCA 107074 | ||| || || | || | ||||| || || || || ||||| Sbjct 41157 -----GGCGATGTAGCTGCCCGTCGAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCG 41211 Query 107075 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 107134 || | || ||||| | || |||| | | | || | ||||| || | ||| ||| Sbjct 41212 GCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCG 41271 Query 107135 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG--TCTTGGTGTACCAGCATTGA 107192 ||||| |||||| |||||||| ||||||| ||| || | |||||| || || |||| Sbjct 41272 TCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTG--CCCGCGTTGA 41329 Query 107193 AGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAG 107251 ||||||| || | ||||| ||||| |||| | |||| | || ||| ||||| | | Sbjct 41330 AGAGGGTGGGGGAGGCGTGGGTGAAC-CACCTCTCCGACAGCAGGTTGTACGTCTCGATG 41388 Query 107252 ACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 | | || ||||| ||||||| |||| || ||| ||||| | ||||| Sbjct 41389 GCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCATGT 41440 >seq594 Length=47165 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 ||||||||||| || ||||| |||| ||| || || || |||| ||||| || Sbjct 29788 TGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTG 29847 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||||| ||||||| || ||||||||||||||||| || || || || || ||||| Sbjct 29848 GTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGTGTACCAGTTTCTGTCTG 29907 Query 106624 TGACT 106628 |||| Sbjct 29908 CGACT 29912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589855746194680