Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2666 127 2e-23 seq2977 104 2e-16 seq512 93.3 3e-13 >seq2666 Length=112169 Score = 127 bits (140), Expect = 2e-23 Identities = 386/592 (65%), Gaps = 12/592 (2%) Strand=Plus/Minus Query 549988 AGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGG 550047 |||| | || || || ||| | || ||||| ||| |||||||||||||| || |||| Sbjct 111386 AGTATCGATTGGCATCGATCTGGGCACCACCTATTCTTGTGTTGGTGTTTTCCAGCATGG 111327 Query 550048 TAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTT 550107 ||||| || || || ||||| || || || ||||| || ||||| || || | || Sbjct 111326 CAAAGTGGAGATCATCGCCAACGACCAGGGAAACAGGACCACTCCCAGCTACGTGGCCTT 111267 Query 550108 CACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTAC 550167 ||| || || || | |||| ||||| || || | |||| | | ||||| || Sbjct 111266 CACAGACACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTCGCCATGAATCCCAC 111207 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 ||| || || |||||||| || || | ||||| |||| ||||| || | || || Sbjct 111206 CAACACCATCTTTGATGCCAAGCGGCTCATTGGGAGAAAGTTTAACGACGCCGTCGTCCA 111147 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | | || ||||| | ||||||||| | | | | | | ||||||||| | | | Sbjct 111146 GTCCGACATGAAACTCTGGCCTTTCAAGGTGATCAGCGATAATGGAAAACC-CAAAGTCC 111088 Query 550288 AGCT--ACTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTAT 550341 || | ||| || |||| | | ||| || | || || |||| || || || Sbjct 111087 AGGTGGACT-ATAAAGG----GGAGACCAAGGCCTTCTACCCGGAGGAAATCTCCTCCAT 111033 Query 550342 GGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGC 550401 ||| | | |||||||| | | || || | | || || | || || |||| Sbjct 111032 GGTCCTTGTTAAAATGAAGGAGATTGCTGAGGCCTACCTGGGACAGGGTGTGTCGAATGC 110973 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 ||| || || || || || ||||| |||||||| || | ||||| || |||||||| || Sbjct 110972 AGTCATCACAGTTCCGGCTTATTTCAATGACTCCCAGAGGCAAGCCACCAAAGATGCCGG 110913 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 || | || || |||||||| | || ||||| || || || || || || | || Sbjct 110912 GGTGATCTCGGGTCTGAATGTTCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGC 110853 Query 550522 ATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || || || || || ||| ||| | ||||| |||||||| ||| Sbjct 110852 CTACGGCCTGGACAAGGGTAAAAGAGGAGAGCGCAATGTGCTCATCTTCGAT 110801 >seq2977 Length=209553 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | |||||||| || || || || ||||| || || || ||||| ||||||| Sbjct 172077 ATGCAGTGGTGACTGTACCTGCCTACTTCAACGACTCTCAGCGCCAGGCTACCAAAGATG 172018 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| ||||||| ||||| |||||||| ||||| || || ||||||||||| Sbjct 172017 CAGGGACCATTTCTGGACTAAATGTCCTTCGTATCATCAACGAGCCAACTGCTGCTGCCA 171958 Query 550518 TTGCATATGGACTTGATAAA 550537 | || || || || || ||| Sbjct 171957 TCGCTTACGGCCTAGACAAA 171938 >seq512 Length=435775 Score = 93.3 bits (102), Expect = 3e-13 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || || || || || || || || | || || || || |||| Sbjct 260379 ATGCCGTGGTTACTGTGCCCGCTTACTTCAACGATTCCCAGAGGCAGGCCACAAAGGATG 260438 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 260439 CTGGGACAATTTCTGGCCTCAATGTCCTGCGTATAATCAATGAACCAACTGCTGCTGCTA 260498 Query 550518 TTGCATATGGACTTGATAA 550536 |||| |||||||| || || Sbjct 260499 TTGCCTATGGACTGGACAA 260517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028399237363930