Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3008 268 2e-66 seq14194 118 2e-21 seq14193 118 2e-21 seq2247 96.9 6e-15 seq594 84.2 4e-11 >seq3008 Length=76608 Score = 268 bits (296), Expect = 2e-66 Identities = 824/1264 (65%), Gaps = 28/1264 (2%) Strand=Plus/Plus Query 221370 CGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGGGCAGCGT 221429 |||||| ||||||||| ||| | ||||| | |||| | | |||||| |||| Sbjct 40277 CGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGT 40336 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 ||||| |||||| |||||| | |||| || || || ||||| ||| || Sbjct 40337 AGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTCTCGAACGGGT 40396 Query 221490 TACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 ||||| | ||| ||||||||| || || || ||||| || || |||| ||| | Sbjct 40397 AACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTGGC 40456 Query 221550 TCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGA 221609 ||||||||| | || || ||||| ||||| ||||||| |||||| | ||||| | Sbjct 40457 GCCTGTTGGACTTTTCGGCCTCGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTTCA 40516 Query 221610 GGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGC 221669 ||| ||| ||||| ||| | | || |||| || ||| | Sbjct 40517 AGTTTTTGACGATTACTTTGGTCACGGCTGCGAGTTTCTT-------AAAGTCAAAGGTC 40569 Query 221670 CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGG 221729 || ||| ||||| | | | | || || || || ||||||||| || |||| Sbjct 40570 TGC--TCG----GGGGTGACGTACATG--TTGAGCGCGACCGAGGCCAGGTTGCAGACGG 40621 Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 | |||||||| | | |||| || | | ||| || || |||||||||||| ||||||||| Sbjct 40622 CGACCTCGTCGTGGCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGG 40681 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||| | | ||| || ||| | ||| ||||| ||||| ||||| | || Sbjct 40682 TGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCG 40741 Query 221850 CGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGGCGCTC-ACCGTC 221908 ||| || || ||| | | | | || || ||| || | |||| || ||| Sbjct 40742 TGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCTG-CTGGGACTTGACCACG 40800 Query 221909 CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCG 221968 | |||| | ||||| ||| || || || |||||| | ||||||| || || Sbjct 40801 CGCTTGGCCCTCCCCTC---CTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCC 40857 Query 221969 TACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCT 222028 | ||||||||| || || ||| | ||||||||| || ||||| || |||| Sbjct 40858 CAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTC 40917 Query 222029 TTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGC 222088 | |||| || |||||| ||||| |||||||||| || | || || || |||| | | Sbjct 40918 TCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTC 40977 Query 222089 TGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCAC 222148 ||||||||| || |||| ||| |||| |||| || || || | |||| |||||| Sbjct 40978 TGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAG 41037 Query 222149 GGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTC 222208 |||||||| || | ||| | ||||||||||| |||||| || ||||| ||||| | | Sbjct 41038 GGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGC 41097 Query 222209 TCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCC 222268 || |||| | | | || | || || || |||||||| ||||||||||| Sbjct 41098 GCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCG 41157 Query 222269 TTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTG 222327 ||||| | ||| | | | | | ||| | | || |||||| || ||||| Sbjct 41158 GCGATGTAGCTGCCCGTC-GAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGA 41216 Query 222328 TTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTT 222387 ||| ||||| | |||||| ||| | ||||| ||||||||| || ||| ||||| Sbjct 41217 TTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTT 41276 Query 222388 GACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGT 222447 | | ||||| || || |||| ||| | || ||| | ||||| || || || Sbjct 41277 CATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTGCCCGCGTTGAAGAGGGT 41336 Query 222448 GGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGC 222507 ||| |||||| || || | | | |||| ||| | ||||||||| | | | | | Sbjct 41337 GGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTC 41396 Query 222508 GATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT---C 222564 ||||| |||| ||| | || | |||| ||||| ||| |||| || | Sbjct 41397 GATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGC 41456 Query 222565 CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||| || || || || | |||||| ||| ||||| |||||||| || ||| | Sbjct 41457 CACTTTGCCGTT-GATCT--TCAACAGGTAGGATCGCTCCAGGGTCTTGAAGCCGAAGAA 41513 Query 222625 GTTG 222628 |||| Sbjct 41514 GTTG 41517 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || |||||||| ||| | |||| || || ||| || | Sbjct 39981 CATCTCCTCGTTCCACAGCCCCCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTGACTAT 40040 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| || || ||||| ||||| | ||| | ||| ||| | || |||||| Sbjct 40041 CTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 40100 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 40101 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGCAGGCT 40160 Query 221245 GTT 221247 ||| Sbjct 40161 GTT 40163 >seq14194 Length=7087 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| ||||| |||||||||||||| ||| ||||| || || |||||||||| Sbjct 3620 TGGTGGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 3561 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || |||||||| ||| ||||| ||||||||||| |||||||| Sbjct 3560 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTG-ACTTTCTCCAACGAGCTGATCAGCAGA 3502 Query 26002 GACGAGG 26008 ||||||| Sbjct 3501 GACGAGG 3495 >seq14193 Length=36040 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| ||||| |||||||||||||| ||| ||||| || || |||||||||| Sbjct 33055 TGGTGGCCTTCGCTGCCGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 33114 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || |||||||| ||| ||||| ||||||||||| |||||||| Sbjct 33115 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTG-ACTTTCTCCAACGAGCTGATCAGCAGA 33173 Query 26002 GACGAGG 26008 ||||||| Sbjct 33174 GACGAGG 33180 >seq2247 Length=89140 Score = 96.9 bits (106), Expect = 6e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 25876 GAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCC 25935 |||||| | || |||||||| || |||||||| ||||| ||| || || || || || Sbjct 52812 GAGCGGATTGTGGCCTTTGCGGCGGTGGAGGGAATCTTCTTCTCTGGCTCTTTCGCTTCC 52871 Query 25936 ATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATC 25995 |||| ||||||||| ||| ||| |||||||| || || ||||||||||| || Sbjct 52872 ATCTATTGGCTCAAGAAGAGAGGGTTGATGCCCGGCCTTACCTACTCCAACGAGCTGATT 52931 Query 25996 AGCAGGGACGAGG 26008 ||||| ||||||| Sbjct 52932 AGCAGAGACGAGG 52944 >seq594 Length=47165 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||||||||||| ||| ||||||||||||||| ||||||| || |||||| || Sbjct 29210 CAGGGCAGCGTAGTAAATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCCGGGCT 29269 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||| | ||||| | ||| | |||||||| ||||| |||||||| || || Sbjct 29270 TTCAAAGGGAAAACGCATTAGGATGAAGGCATCGGCCAGACCCTGCACTCCGATTCCAAT 29329 Query 221539 GGGCCTGTGTCTCCTGTTGGA 221559 |||||||| | | |||| || Sbjct 29330 CGGCCTGTGGCGCTTGTTAGA 29350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928647919734080