Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1579 212 7e-50 seq1580 203 4e-47 >seq1579 Length=133821 Score = 212 bits (234), Expect = 7e-50 Identities = 551/823 (67%), Gaps = 19/823 (2%) Strand=Plus/Plus Query 160134 AGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTG 160193 |||| |||| ||| ||| || | ||| |||||||||| | ||| |||| | || || Sbjct 127812 AGGAGCCAGGGCAGGTCACCAGCTCCGTACACGCAGACCGCTCGTCTGTGTGCACCCATG 127871 Query 160194 CAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGC--CACTTCACAA 160251 || || |||||| | |||||||| ||| || ||||| ||| ||||| |||||||| Sbjct 127872 CAGGGGGGGTACGGGGCTCCTTTTTTCACATCTCCTTC-TAG-ACTGCTCCACTTCACCG 127929 Query 160252 ACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGG 160311 | || | || |||||||| || ||||| ||| | ||| || | |||| Sbjct 127930 CTCGAGCGAGGGCTTGCATGTCTGACACATCGTACTTGATGTTGGTGGGCACTGATCCGG 127989 Query 160312 GAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCT 160371 | ||| |||||| ||||| || |||||||||| ||| || || |||||||| |||||| Sbjct 127990 GCACGGAGGGCATTCGCTGCAGAGTGGCCCACAAGTGCTCATCAGGGCTGTATGTGTCCC 128049 Query 160372 TAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTGAGTAACGTAGGAT 160430 | ||| |||| ||| | | || | |||||| |||| || || || ||| | Sbjct 128050 TCTCCCACTCCA-GAAGTTGCTGAACCTCTCTGTCCTGCAGCACATGTTCCACAAAGGCT 128108 Query 160431 CTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCT 160490 ||| | || |||||||| ||||| || ||| ||||| || || ||||| | | || Sbjct 128109 CTGCTGACCACAAAGTAAGCGCTTCCTTTGAACATCGGGCTGCCGATGGGCGGGG-GACT 128167 Query 160491 -TTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCT 160549 || | | | |||| || ||||| || || || | | | ||| | Sbjct 128168 CTTCTTCACATCGGTCTTG---ACCACAGTATTAGTCACGTTGTAATGATACAGCCAACG 128224 Query 160550 GACCATCTTGT-GCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATT 160608 ||| |||| | | || | | | ||| ||| | ||||| |||| ||| | | Sbjct 128225 GACTTTCTTATAGTCGTCGGTCACCT-CCGACTCCATGCTGTTCCTCCCGTTGAGGGCCT 128283 Query 160609 TCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTA 160668 ||||| || || || ||| ||| | |||| || |||||||| || || ||| | Sbjct 128284 TCAGCGTCTGAACCATTTCTGCGTTGCTTTTGATGGGGAAGTCGGTCCCACAGGTGTTCA 128343 Query 160669 TCACGTACTTCCATT---TCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTG 160725 || ||| ||||| | || || | | || |||| ||| ||||||| || | ||||| Sbjct 128344 GCAAGTATTTCCACTGGATC-CG-TGAATTCA-GCAGATCCTTCATGCAGTTCAAATCTG 128400 Query 160726 CCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGT 160785 ||||||| | | |||||| || || || ||| | |||| | ||||||| ||||| |||| Sbjct 128401 CCTGCACTCTGGACCAGGAGGCATAGACCACGCTTTCTAATCTACTGGCTACAAACACGT 128460 Query 160786 TATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGT 160845 || || || || | ||| || |||| ||| ||| ||| | || ||| Sbjct 128461 TAGGAAAGCAGGAAATAATTGCCTCCACAGCCTTTTGGAATCCTTTAGAGGATTTCTGGT 128520 Query 160846 CCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACA 160905 |||| ||||| || || | ||||||||| | ||| | || | || | | ||| |||| Sbjct 128521 CCACATGCACACAGTAGATGTTCTGAGGAGTGTAAACAGCTCGAAGGAGTCGCTCAAACA 128580 Query 160906 TCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 |||| ||||| | ||||||||| || |||||||| || ||||| Sbjct 128581 TCTCAATCTTCTCATGGATCACCATGGAGTAGGCGATGGGAAA 128623 Score = 127 bits (140), Expect = 2e-24 Identities = 178/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 160699 GCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGT 160758 |||| ||| ||||||| || | |||||||||||| | | ||| || || || || ||| Sbjct 129772 GCAGATCCTTCATGCAGTTCAAATCTGCCTGCACTCTGGACCACGAGGCATAGACCACGC 129713 Query 160759 TCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCA 160818 | |||| | ||||||| ||||| |||||| || || || | ||| || |||| ||| Sbjct 129712 TTTCTAATGTACTGGCTACAAACACGTTAGGAAAGCAGGAAATAATTGCCTCCACAGCCT 129653 Query 160819 GAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 ||| ||| | || ||||||| ||||| || || | ||||||||| | || Sbjct 129652 TTTGGAATCCTTTAGAGGATTTCTGGTCCACATGCACACAGTAGATGTTCTGAGGAGTGT 129593 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 | | || | || | | ||| |||||||| ||||| | ||||||||| || ||||||| Sbjct 129592 AAACAGCTCGAAGGAGTCGCTCAAACATCTCAATCTTCTCATGGATCACCATGGAGTAGG 129533 Query 160939 CTATCGGAAA 160948 | || ||||| Sbjct 129532 CGATGGGAAA 129523 >seq1580 Length=61053 Score = 203 bits (224), Expect = 4e-47 Identities = 548/823 (67%), Gaps = 19/823 (2%) Strand=Plus/Plus Query 160134 AGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTG 160193 |||| |||| ||| ||| || | ||| |||| ||||| | ||| |||| | || || Sbjct 2792 AGGAGCCAGGGCAGGTCACCAGCTCCGTACACACAGACCGCTCGTCTGTGTGCACCCATG 2851 Query 160194 CAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAG-TACTGCCACTTCACAAA 160252 || || |||||| | |||||||| ||| || ||||| ||| || ||||||||| Sbjct 2852 CAGGGGGGGTACGGGGCTCCTTTTTTCACATCTCCTTC-TAGATAGCTCCACTTCACCGC 2910 Query 160253 CCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGG 160312 | || | || |||||||| || ||||| ||| | ||| || | ||||| Sbjct 2911 TCGAGCGAGGGCTTGCATGTCTGACACATCGTACTTGATGTTGGCGGGCACTGATCCGGG 2970 Query 160313 AACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTT 160372 ||| |||||| ||||| || |||||||||| ||| || || |||||||| |||||| | Sbjct 2971 CACGGAGGGCATTCGCTGCAGAGTGGCCCACAAGTGCTCATCAGGGCTGTATGTGTCCCT 3030 Query 160373 AGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTGAGTAACGTAGGATC 160431 ||| |||| ||| | | || | |||||| |||| || || || ||| || Sbjct 3031 CTCCCACTCCA-GAAGTTGCTGAACCTCTCTGTCCTGCAGCACATGTTCCACAAAGGCTC 3089 Query 160432 TGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCT- 160490 || | || |||||||| ||| | || | ||| ||||| || || ||||| | | || Sbjct 3090 TGCTGACCACAAAGTAAGCGTTTCCTGTGAACATCGGGCTGCCGATGGGCGGGG-GACTC 3148 Query 160491 TTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTG 160550 || | | | |||| || ||||| || || || | | | ||| | | Sbjct 3149 TTCTTCACATCGGTCTTG---ACCACAGTATTAGTCACGTTGTAATGATACAGCCAACGG 3205 Query 160551 ACCATCTTGTG--CGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATT 160608 | |||| | || ||| | |||| ||| | ||||| |||| ||| | | Sbjct 3206 CCTTTCTTATAGTCGTTGGTCACC--TCCGACTCCATGCTGTTCCTCCCGTTGAGGGCCT 3263 Query 160609 TCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTA 160668 ||||| || || || ||| ||| | |||| || |||||||| || || ||| | Sbjct 3264 TCAGCGTCTGAACCATTTCTGCGTTGCTTTTGATGGGGAAGTCGGTCCCACAGGTGTTCA 3323 Query 160669 TCACGTACTTCCATT---TCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTG 160725 || ||| ||||| | || || | | || |||| ||| ||||||| || | ||||| Sbjct 3324 GCAAGTATTTCCACTGGATC-CG-TGAATTCA-GCAGATCCTTCATGCAGTTCAAATCTG 3380 Query 160726 CCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGT 160785 ||||||| | | |||||| || || || ||| | |||| | ||||||| ||||| |||| Sbjct 3381 CCTGCACTCTGGACCAGGAGGCATAGACCACGCTTTCTAATGTACTGGCTACAAACACGT 3440 Query 160786 TATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGT 160845 || || || || | ||| || |||| ||| ||| ||| | || ||| Sbjct 3441 TAGGAAAGCAGGAAATAATTGCCTCCACAGCCTTTTGGAATGCTTTAGAGGATTTCTGGT 3500 Query 160846 CCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACA 160905 |||| ||||| || || | ||||||||| | ||| | || | || | | ||| |||| Sbjct 3501 CCACATGCACACAGTAGATGTTCTGAGGAGTGTAAACAGCTCGAAGGAGTCGCTCAAACA 3560 Query 160906 TCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 |||| ||||| | ||||||||| || |||||||| || ||||| Sbjct 3561 TCTCAATCTTCTCATGGATCACCATGGAGTAGGCGATGGGAAA 3603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577096851175320