Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3008 152 6e-32 seq594 91.5 2e-13 >seq3008 Length=76608 Score = 152 bits (168), Expect = 6e-32 Identities = 641/994 (64%), Gaps = 31/994 (3%) Strand=Plus/Minus Query 75702 CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGGGTGGTCAATGGTCTCT 75759 || ||||||| || ||||| |||||||||||||| ||| | || | ||||| || Sbjct 40954 CCATGTGGATCCCCGACCTGTTCATGAAGCGGGTGGAGAGCAACCAGGAC--TGGTCCCT 40897 Query 75760 TTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCC 75818 | ||||| || || || || || ||| || | ||| |||||||||||| | Sbjct 40896 CATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGG-GAGGAGTTTGAAAAGC 40838 Query 75819 TCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT- 75877 ||||||| || || ||||||| || ||||| ||| || | || | | | | | Sbjct 40837 TCTACACGTCCTACGAGAAGGAGGGGAGGGCCAA-GCGCGTGGTCAAGTCCCAGCAGCTG 40779 Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || || || | || ||||| || || || || ||||| ||||| ||||| || Sbjct 40778 TGGCACGCCATCATCGAGTCCCAGACCGAAACCGGCACGCCATACATGCTGTACAAAGAC 40719 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||||| ||||| ||||| |||| || |||||| | || || ||| Sbjct 40718 GCCTGCAACAGGAAGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGC 40659 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATC 76057 |||||||| | || ||||| | || ||| || || ||||| |||| || || Sbjct 40658 ACGGAAATCGTCGAATACACCAGCCACGACGAGGTCGCCGTCTGCAACCTGGCCTCGGTC 40599 Query 76058 GCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAA 76117 || || | ||| |||| ||| | || ||||| | | | ||||| | Sbjct 40598 GCGCTCAACATGTACGTCACCCCCGAG---CAGACCTTTGACTTTAAGAAACTCGCAGCC 40542 Query 76118 ATCA-CAAAG--ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCC 76174 | | ||||| || || |||||| | ||| |||| |||| || || ||||| Sbjct 40541 GTGACCAAAGTAATCGT---CAAAAACTTGAACAAGATCATCGACATCAACTTCTATCCG 40485 Query 76175 GT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAA 76231 || ||| || |||||| || | ||| ||| | || || || | || || ||| Sbjct 40484 GTGCCCGAG---GCCGAAAAGTCCAACAGGCGCCACCGGCCGATAGGAATCGGCGTGCAA 40428 Query 76232 GGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAG 76291 || | || || | || || | || ||| | || || ||||| || | Sbjct 40427 GGCTTGGCCGACGCCTTCATCCTCATGCGTTACCCGTTCGAGAGCCCCGAAGCTCAGCTG 40368 Query 76292 ATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTG 76351 |||| | | ||||| || ||| | || |||| ||||||||||||| || || || Sbjct 40367 CTGAACACGCAGATCTTCGAGACCCTCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTG 40308 Query 76352 GCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC--CCAAGGGGTGC 76409 || | | | || |||| ||||| | | ||| || || |||| || || | | Sbjct 40307 GCCGCCGAGCTCGGCCCCTACGAGACGTACGCGGG--CTGCCCCGTCAGCCGGGGCATCC 40250 Query 76410 TTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GACTGGGATGTTCTCAA 76467 | |||| || ||||||| || ||| || | | | || | ||||||| | || || Sbjct 40249 TGCAGTACGACATGTGGG-AGAAGAAGCCCA-CCGACCTGCTGGACTGGGGCCTGCTGAA 40192 Query 76468 GGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGC 76527 ||| ||| || | || | | ||||| || || |||| || ||||| || || Sbjct 40191 GGAGAAGATCGCCAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCGCCGATGCCCACGGC 40132 Query 76528 CTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTA 76587 ||||||||| || ||| |||| || || || | | | || || ||||| | |||||||| Sbjct 40131 CTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTA 40072 Query 76588 CCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCT 76647 | | || |||| | || ||||| || |||||| || || |||| ||||| Sbjct 40071 CACCCGCAGGGTCCTCTCCGGGGAGTTCCAGATAGTCAACCCCCATCTGCTCAAAGACCT 40012 Query 76648 CAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 | ||| || || ||| | |||| |||||| Sbjct 40011 GACTGAGAGGGGGCTGTGGAACGAGGAGATGAAG 39978 Score = 93.3 bits (102), Expect = 5e-14 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || | |||| ||||||| ||||| || | | | Sbjct 41447 CCGCAGCACATGCTCATGCGCGTGTCCGTCGGGATCCACGAAACGGACATCGACGCGGCC 41388 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | |||| | |||| ||||| ||||| | || |||||||| Sbjct 41387 ATCGAGACGTACAACCTGCTGTCGGAGAGGTG-GTTCACCCACGCCTCCCCCACCCTCTT 41329 Query 75331 CAATGCTGGTACACCA--AGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 75388 ||| || || ||||| || || ||| ||||||| |||||||| |||||| ||||| Sbjct 41328 CAACGCGGG--CACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGAC 41271 Query 75389 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 75448 ||| ||| | || ||||| | || | | | |||| || | ||||| || | || Sbjct 41270 GACAGCATCGAGGGCATCTACGACACCTTGAAGCAGTGCGCCCTCATCTCCAAATCAGCC 41211 Query 75449 GGGGGTATTGG 75459 ||||| || || Sbjct 41210 GGGGGGATCGG 41200 >seq594 Length=47165 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||| || ||||| ||||| || ||||| |||||||| || || |||| |||||| Sbjct 29910 TCGCAGACAGAAACTGGTACACCGTACATGCTCTACAAGGACGCCTGCAACAGGAAGAGC 29851 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| ||||| |||| || || || | ||||| ||||| || || |||||||| Sbjct 29850 AACCAGCAGAATCTGGGCACCATAAAATCCAGCAATCTGTGCACAGAGATCGTAGAGTAC 29791 Query 76016 ACA 76018 ||| Sbjct 29790 ACA 29788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596443149616160