Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq3008 244 1e-59 seq562 114 1e-20 >seq3008 Length=76608 Score = 244 bits (270), Expect = 1e-59 Identities = 962/1495 (64%), Gaps = 65/1495 (4%) Strand=Plus/Plus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | ||||| | || |||||||| ||||| ||||| || |||| Sbjct 40071 GTAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 40130 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCGT 138657 || || ||||| ||||| || || |||| | ||||| |||| || | Sbjct 40131 GGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTG---CTTGGCGATCTT 40187 Query 138658 -TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 ||||| ||| ||||||| || ||| | || || || | |||||| |||||||| Sbjct 40188 CTCCTTCAGCAGGCCCCAGTCCAGCAGGTCGGTGGGCTTCTTCTCCCACATGTCGTACTG 40247 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGC 138776 | || ||| || |||| | ||| |||||| ||||| || | ||| || Sbjct 40248 CAGGATGCCCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGC 40307 Query 138777 CAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAG 138836 || |||| ||||||||| || || | ||||| | || ||| |||||| || || Sbjct 40308 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAG 40367 Query 138837 CAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCC 138896 || | || |||| ||||||| |||| || | | |||| |||||||||| || Sbjct 40368 CAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAGCC 40427 Query 138897 TTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---AT 138953 ||||||||| | ||| | || || |||||| || ||| ||| |||| ||| | Sbjct 40428 TTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGAC---TTTTCGGCCTCGGGCAC 40484 Query 138954 AGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTA 139011 ||||| |||| | |||||||| ||||| || ||| |||| || || || || Sbjct 40485 CGGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGC 40544 Query 139012 TGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTG 139071 ||| | | | ||| || | || | ||| | ||||| ||| || Sbjct 40545 TGC--GAGTTTCTTAAAGTCAAAGGT------CTGCTCGGGGGTGACGT--ACA----TG 40590 Query 139072 TTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACA 139131 |||| | |||||| | |||||| || || || |||||| || | |||||||||| Sbjct 40591 TTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACG 40650 Query 139132 ATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGG 139191 ||||| | || | || || ||||||| || || | ||| || || ||||| || | | Sbjct 40651 ATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTG 40710 Query 139192 TTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATG 139251 || || || |||||||| ||||| || || ||||| ||||| || | ||| || ||| Sbjct 40711 TTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATG 40770 Query 139252 AATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTT 139311 | ||| | ||| | | ||||| |||| | | | | | | | | ||| Sbjct 40771 GCGTGCCACAGCT-----GCTGGGACTTGAC-CACG---CGCTTGGCCCTCCCCTCCTTC 40821 Query 139312 TC---------GTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGA 139359 || |||||| | || || || | | || | | |||| || || | Sbjct 40822 TCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTC---CAGCCCGGGG 40878 Query 139360 CACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGA 139419 |||| || ||||||||||| ||||| | ||| || || ||| |||||||||| Sbjct 40879 CACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGG 40938 Query 139420 TCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTA 139479 || || ||||||| ||| | | | || | || ||| || ||| ||| |||| Sbjct 40939 TCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTC 40998 Query 139480 CGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 |||| | ||||| || || |||||| |||||| || ||||| || ||||| | Sbjct 40999 TTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAA 41058 Query 139540 GCGCC---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 ||||| | || || || || || || |||| || | | || ||| | || | Sbjct 41059 GCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTT 41118 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTG--TTGCGAG 139654 | ||| || | || ||| | | | |||||||||| |||| ||| |||| Sbjct 41119 AGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAG 41178 Query 139655 CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAAT 139714 |||| | || | |||||| || ||| | ||||||| || | |||| | Sbjct 41179 --CGGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACT 41236 Query 139715 CGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCAT 139773 || | || || ||||| || || ||||||||||||| ||| | || ||| ||||| Sbjct 41237 -GCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAG 41295 Query 139774 GACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC 139833 || || || || || ||||| || || || || || ||||| |||||| Sbjct 41296 CTGGACAGCTGTGGCCTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAC 41355 Query 139834 ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATA 139893 | ||||| || | |||||| |||||||| | || ||| || ||||||| Sbjct 41356 CACCTCTCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTGGATC 41415 Query 139894 CCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttttt 139953 ||||| || || ||||| ||||| || || ||| |||||||| ||| | ||| || Sbjct 41416 CCGACGGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTC 41475 Query 139954 ttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||| || | || ||| ||||||||| |||| ||| | | ||| |||||| Sbjct 41476 AACAGGTAGGATCG--CTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 41528 >seq562 Length=198046 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || ||| | Sbjct 189128 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189069 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 189068 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189009 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 189008 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188949 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | |||||| Sbjct 188948 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 188901 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || ||| | Sbjct 189356 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189297 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 189296 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189237 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 189236 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 189177 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | |||||| Sbjct 189176 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 189129 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || || ||| | Sbjct 189584 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 189525 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 189524 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189465 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 189464 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 189405 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | |||||| Sbjct 189404 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 189357 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || ||| | Sbjct 185742 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185683 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 185682 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 185623 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || || ||| Sbjct 185622 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 185563 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | |||||| Sbjct 185562 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 185515 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || || ||| | Sbjct 185970 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 185911 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 185910 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 185851 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 185850 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 185791 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || || | ||| |||| || | |||||| Sbjct 185790 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGGC 185743 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || ||| | Sbjct 188900 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188841 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 188840 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 188781 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 188780 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188721 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || |||||||| || || || | ||| |||| || | |||||| Sbjct 188720 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGC 188673 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || ||||| || || || ||| | Sbjct 188672 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188613 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 188612 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 188553 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 188552 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188493 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || | ||| |||| || | ||||| Sbjct 188492 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGGGGAGG 188446 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || || || ||| | Sbjct 185514 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185455 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || ||||| Sbjct 185454 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGATCAG 185395 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 185394 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAATACAAC 185335 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || || | ||| |||| Sbjct 185334 ATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 185300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449802238579960