Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2666 178 1e-38 seq512 118 8e-21 >seq2666 Length=112169 Score = 178 bits (196), Expect = 1e-38 Identities = 925/1462 (63%), Gaps = 18/1462 (1%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 |||| | |||||| ||||| || |||||||||| || |||||||| |||| ||| || | Sbjct 109927 CGGCGGACACATTTAGAATGCCGTTGGCATCCACGTCGAATGTGACCTCAACTTGTGGTA 109986 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 ||||||| |||| || ||||| || | || ||| | |||| || || || | Sbjct 109987 CCCCTCTGGGAGCGGGAGGGATACCAGTGAGATCAAACTTGCCCAAGAGGTTGTTGTCCT 110046 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAAT 281603 | || | | || ||||| | | || || || | | ||||| ||||||| Sbjct 110047 TGGTCATGGCCCTCTCGCCCTCATACACCTGAATCAGCACACCTGGCTGATTGTCTGAAT 110106 Query 281604 AAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || | || | ||||| | | || | || || || ||||||| | || | Sbjct 110107 ATGTGGAGAAGA-TCTGGGTCTGCTTGGATGGGATGGTGGTGTTTCGTTTGATTAGCGGC 110165 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||||| || || || || || | || ||||| || |||| ||||| | || | Sbjct 110166 GTCATAACCCCGCCGGCCGTCTCAATGCCCAGAGACAGTGGAGCCACATCCAGCAGCAGC 110225 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || ||| | || || || | || | || || || || || | || || || Sbjct 110226 AGATCTTGGACGTTCTCTGAGGTGTCCCCCATGAGGATGGCGGCCTGGACCGCTGCGCCG 110285 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || || ||||||||||| || || | | | || |||| | ||||| ||||| | | Sbjct 110286 TACGCCACAGCTTCATCCGGGTTGATGCTCTTGTTCAGTTCTCGGCCATTAAAAAAGTCT 110345 Query 281843 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || || | ||| | || ||||| | | ||| || ||||||| ||||||||||| Sbjct 110346 TGTAGGAGCT-TCTGGATTTTGGGAATTCTTGTTGAGCCGCCAACTAGGACAATTTCATG 110404 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | || |||||||||||| || | ||| | | || || || || || || | Sbjct 110405 GATCTTTGATTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCCACTGGCTCCAGTGTTCC 110464 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 282019 || || | ||||| || || || || || || || || || | || || Sbjct 110465 CCTGAAGAGCTCTGAGTTGAGCTCCTCAAACCGTGCCCTGGT--GATGGAGGTGTAGAAG 110522 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 || || || ||||||| ||| || | ||||| | | || || || ||||| | Sbjct 110523 TCGATGCCCTCGAACAGAGAGTCGATCTCAATGCTGGCCTGGGTGCTGGAGGATAGGGTC 110582 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA 282139 | || || | ||||| || || | ||||| | | ||| | || |||| | | Sbjct 110583 CTCTTTGCTCTCTCACAAGCAGTACGCAGTCTCCTCACTGCTCT--CTTATTGCCGCTGA 110640 Query 282140 TCTGTTT--TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 | | || ||| |||||| ||||| || || ||| | | || | || || |||| Sbjct 110641 TGTCCTTCTTATGTTTTCTTTTGAACTCCTCCACAAAGTGGTTGACCATCCGGTTGTCAA 110700 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || || || || | | || | ||||| || ||| | || | || | ||||| | Sbjct 110701 AGTCCTCCCCGCCAAGGTGCGTGTCTCCTGCGGTGGCTTTCACCTCAAAGATGCCATCCT 110760 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | || | | || || ||| || ||||| | ||| || || || ||||| Sbjct 110761 CAATGGTCAGGATGGACACGTCGAAGGTGCCTCCACCGAGATCGAAGATGAGCACATTGC 110820 Query 282318 TTTCTTTGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 ||| |||| || || || || || || || | || || || || || || | Sbjct 110821 GCTCTCC-TCTT--TTACCCTTGTCCAGGCCGTAGGCGATGGCTGCCGCCGTGGGCTCGT 110877 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 | || || |||| |||||| ||||| | || || |||||||| |||||||| || | Sbjct 110878 TGATGATCCTCAGAACATTCAGACCCGAGATCACCCCGGCATCTTTGGTGGCTTGCCTCT 110937 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATAT 282494 | || || || ||||| || ||||| || || || |||| | || | | ||| | | Sbjct 110938 GGGAGTCATTGAAATAAGCCGGAACTGTGATGACTGCATTCGACACACCCTGTCCCAGGT 110997 Query 282495 AAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAAT 282554 | || || | | ||||||||| | | ||| || || |||| || || | Sbjct 110998 AGGCCTCAGCAATCTCCTTCATTTTAACAAGGACCATGGAGGAGATTTCCTCCGGGTAGA 111057 Query 282555 ATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 | ||||| || || ||| || | | | ||||| | | | | || | Sbjct 111058 AGGCCTTGGTCTCCCCTTTATAGTCCACCTGGACTTTGGGTTTTCCATTATCGCTGATCA 111117 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | || || ||||| |||||| || || || || ||| ||||| | ||| |||| Sbjct 111118 CCTTGAAAGGCCAGAGTTTCATGTCGGACTGGACGACGGCGTCGTTAAACTTTCTCCCAA 111177 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || |||||||| || || ||||| ||||| | || |||| | ||||| | Sbjct 111178 TGAGCCGCTTGGCATCAAAGATGGTGTTGGTGGGATTCATGGCGACTTGGTTCTTGGCAG 111237 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 |||||||||| || ||||| ||||| || | || || ||||| || | || | Sbjct 111238 CATCTCCAATGAGCCTCTCTGTGTCTGTGAAGGCCACGTAGCTGGGAGTGGTCCTGTTTC 111297 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | || || || || || || || ||||| |||| || | ||||| |||||| | | | Sbjct 111298 CCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACACCAACACAAGAATAGG 111357 Query 282855 TTGTTCCTAAATCAATACCAAT 282876 | || || | ||| || ||||| Sbjct 111358 TGGTGCCCAGATCGATGCCAAT 111379 >seq512 Length=435775 Score = 118 bits (130), Expect = 8e-21 Identities = 115/147 (78%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || || ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 260520 TTCTTGTCCAGTCCATAGGCAATAGCAGCAGCAGTTGGTTCATTGATTATACGCAGGACA 260461 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| |||| | || ||||| || ||||| || || || |||||||| || || Sbjct 260460 TTGAGGCCAGAAATTGTCCCAGCATCCTTTGTGGCCTGCCTCTGGGAATCGTTGAAGTAA 260401 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 || || ||||||| ||||||| |||| Sbjct 260400 GCGGGCACAGTAACCACGGCAT-TGTT 260375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739797882960282