Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1046 87.8 3e-12 >seq1046 Length=17845 Score = 87.8 bits (96), Expect = 3e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 58377 GAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCA 58436 |||| | |||||||| | || ||||| || || || || | || || |||||||||| Sbjct 6439 GAGCTCTGTGGTGGTATTTCATCTCTAAGGGCATTGAGTATCTGGACACGGTGTTTTTCA 6380 Query 58437 TACTTAGGAAAAAGTTTAATCATGTTAGCTTTC-TACACGTATATCATCATTTTACTATG 58495 | || |||||||| || || || |||| ||||| | || || || || || | || ||| Sbjct 6379 TCCTGAGGAAAAAATTCAACCAGGTTA-CTTTCTTGCATGTCTACCACCACTGCACCATG 6321 Query 58496 TTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 || ||| | | ||| | || || |||||| | |||||||| ||| Sbjct 6320 TTCACTCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 6276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903219710703520