Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq3914 109 6e-19 >seq3914 Length=149271 Score = 109 bits (120), Expect = 6e-19 Identities = 238/353 (67%), Gaps = 5/353 (1%) Strand=Plus/Minus Query 176945 GGCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTA 177004 |||||| || | || || ||| |||||| |||||| ||||| ||||||||| ||| | Sbjct 75566 GGCCAGCTCCTTGGGCGAAGTGAAGTCGTCCACGTGGATGAAGGCGTCTCCCTGGATAAA 75507 Query 177005 ATTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGA 177064 || ||||| || | || | | ||||| || | || || | || | || | Sbjct 75506 GTTCTCGTAGTTTTGCCTGGGCGGCCCGAGAACCACTGGCACTGAGCCCACGGACAGCGG 75447 Query 177065 TCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAA 177124 ||| |||||||| || || |||||| |||| | |||||||||||| || || ||||| Sbjct 75446 GTTGTACAGTTTTTCAGTGATGTAGTCCTTGTGAATGGAGTTCTCAAAAGCCAGGTAGAA 75387 Query 177125 TTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACG 177182 || ||| | ||| || |||| | |||| | || | || || || || | | Sbjct 75386 CTTGCAGCTGGCGATGGT--GGGGAAGTAGTCTTGGTCCGAGATGTACTCCCCGAAGGCT 75329 Query 177183 TTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACG 177242 | || || |||| | || |||||||| ||||| |||||| || | |||| Sbjct 75328 TGTCCATACGCATGCACCTCAATGTGTTTGTACAGCTCATTGTAGTACTTCACCCGCACG 75269 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGG 177295 ||||| | |||||| ||||| || | |||||| | | |||| | ||||| || Sbjct 75268 TGGTCCTGGTTCCAGTTGCTCACAATCCAGCAGATGAGCTTG-TTTTTGCTGG 75217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578309394107200