Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq562 111 1e-19 >seq562 Length=198046 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| || | ||| | ||| || ||| ||| || || |||||||| |||||| Sbjct 185744 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 185803 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| | |||||||||| | || Sbjct 185804 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 185863 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || || || |||| | | || | ||||||||| | || || Sbjct 185864 ATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCGAC 185922 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 185923 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 185970 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||| |||| ||| | ||| | ||| || ||| ||| || || |||||||| ||||| Sbjct 185287 ACCACTCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTATTCGGA 185346 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| || || |||||||| |||| | |||||||||| | || Sbjct 185347 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGG 185406 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || || || |||| | | || | ||||||||| | || | Sbjct 185407 GATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCGA 185465 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||| || || || || | || || || ||||||||||| Sbjct 185466 CCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 185514 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | ||| | ||| || ||| || || || |||||||| |||||| Sbjct 189358 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 189417 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| | |||||||||| | || Sbjct 189418 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189477 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || |||| | | || | ||||||||| | || || Sbjct 189478 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCGAC 189536 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 |||| ||||| || || || || | ||||| ||||||||||||||| || Sbjct 189537 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTT 189588 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| || | ||| | ||| || ||| ||| || || |||||||| |||||| Sbjct 188446 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 188505 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| | |||||||||| | || Sbjct 188506 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 188565 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || |||| | | || | ||||||||| | || || Sbjct 188566 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCGAC 188624 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || | || || |||||||||||||| Sbjct 188625 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 188672 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | ||| | ||| || ||| || || || |||||||| |||||| Sbjct 188902 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 188961 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| | |||||||||| | || Sbjct 188962 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189021 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || |||| | | || | ||||||||| | || || Sbjct 189022 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCGAC 189080 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || | || || |||||||||||||| Sbjct 189081 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189128 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | ||| | ||| || ||| || || || |||||||| |||||| Sbjct 189130 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 189189 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| | |||||||||| | || Sbjct 189190 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189249 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || |||| | | || | ||||||||| | || || Sbjct 189250 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCGAC 189308 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || | || || |||||||||||||| Sbjct 189309 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189356 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | ||| | ||| || ||| || || || |||||||| |||||| Sbjct 185516 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 185575 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| | |||||||||| | || Sbjct 185576 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGG 185635 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || |||| | | || | ||||||||| | || || Sbjct 185636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCGAC 185694 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || | || || |||||||||||||| Sbjct 185695 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 185742 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | ||| | ||| || ||| || || || |||||||| |||||| Sbjct 188674 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 188733 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| |||| | |||||||||| | || Sbjct 188734 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 188793 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || || || |||| | | || | ||||||||| | || || Sbjct 188794 ATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTCTCGATGGTGTCGCTGGGCTCGAC 188852 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || || || | || || || ||||||||||| Sbjct 188853 CTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 188900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328636068901440