Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3008 230 2e-55 seq594 96.9 3e-15 seq562 96.9 3e-15 >seq3008 Length=76608 Score = 230 bits (254), Expect = 2e-55 Identities = 955/1488 (64%), Gaps = 34/1488 (2%) Strand=Plus/Plus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | ||||| | ||||| || ||||| | || ||||| |||| || || Sbjct 40078 TTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 40137 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAA 147057 ||||| ||||| || || || | || |||| | ||| || ||||||| Sbjct 40138 GGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGC 40197 Query 147058 GTTTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTC 147115 ||||||| || ||| | |||| || | ||||||||||||||| || | | Sbjct 40198 AGGCCCCAGTCCAGCAGGTCG--GTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGC 40255 Query 147116 CTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCA 147174 | || ||| |||| | ||| ||| |||| |||| ||| || | ||| ||| || Sbjct 40256 CCCGGCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCG 40314 Query 147175 CAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTC 147234 ||||| ||||| || || | ||||| | ||| ||| ||| || |||| || | Sbjct 40315 CAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGA 40374 Query 147235 GCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATA 147294 ||||| ||||||| | || ||||| || | ||||| |||||||| || || | Sbjct 40375 GCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACG 40434 Query 147295 CCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTG 147353 |||| || || || || || |||| | |||| |||| | |||||| Sbjct 40435 CCGATTCCTATCGGCCGGTGGCGCCTGTTGGA-CTTTTCGGCCTCGGGCACCGGATAGAA 40493 Query 147354 GTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTT 147413 |||| || || |||||||| | ||| || | ||||| || | | | |||||| Sbjct 40494 GTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCACGGCTGCGAGTTT 40553 Query 147414 CTCGAAATCATAAGTCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCA 147472 || || ||| | ||| || | |||||| || ||| | |||| || |||| Sbjct 40554 CTTAAAGTCAAAGGTCTGCTCGGGGGTGACGTAC--AT--GTTGAGCGCGACCGAGGCCA 40609 Query 147473 GATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGC 147532 | ||||||||||| ||| ||| | | |||| | |||||||| | ||| ||||||| Sbjct 40610 GGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGC 40669 Query 147533 TGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGA 147592 || | || ||| |||| ||| || || ||||| |||| ||||| ||||||||| | | Sbjct 40670 TGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACA 40729 Query 147593 GCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCG 147652 ||||||| || |||||| ||| || | || | ||| ||| | ||| | Sbjct 40730 GCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCTGCTGGG 40789 Query 147653 -CTCG--CACCCGCT--GCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTC 147707 || | ||| |||| ||| | ||||| || ||||| | ||| | | || Sbjct 40790 ACTTGACCACGCGCTTGGCC-----CTCCCCTCCTTCTCGTAGGACGTGTAGAGCTTTTC 40844 Query 147708 AAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA 147767 |||||| || || |||| ||| | || ||||| |||| | |||||||| || ||||| Sbjct 40845 AAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGACCA 40904 Query 147768 CATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAG 147827 | || | || || ||| ||||| || || | ||||| ||||| | ||| Sbjct 40905 GTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAG 40964 Query 147828 ATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAG 147885 || | || || ||| ||||| ||| |||| |||| | || | | | Sbjct 40965 GTCCCTGGCTCTCTGC--TCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCGAAC 41022 Query 147886 ATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCC 147942 | ||| ||||||||| || | ||| | ||| | || || | | || |||||| Sbjct 41023 ACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTGTTCCCGCCC 41082 Query 147943 TGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCA 148002 ||||| || | ||| || ||||||| | || | | |||||| | || ||| | | Sbjct 41083 TGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGAG 41142 Query 148003 GTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGC--ACGTTAACGC 148060 ||||||||||| ||| | ||||| | | | || | | || ||| |||| Sbjct 41143 TTGCCGTTGGTGCCGGCGATGTAGCTGC--CCGTCGAGCGGATGGAGCTGACGGCCACGC 41200 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGT 148120 | || || ||| | | || || ||| ||||| | ||| || ||||||||| | Sbjct 41201 CGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGCCCT 41260 Query 148121 CGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTC 148180 |||||||||||| || | | | |||| || || ||| || || | || | Sbjct 41261 CGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTGC 41320 Query 148181 CCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACG 148240 |||| ||| |||||||| ||||| || ||| | | | || || | |||| Sbjct 41321 CCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGTTGTACG 41380 Query 148241 TCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGT 148300 |||| || || | |||||||| |||| || || | | |||||||||||||||| Sbjct 41381 TCTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCATGT 41440 Query 148301 GCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTT 148360 |||| || || ||||| |||| ||||||||| | || || || ||||| | Sbjct 41441 GCTGCGGCCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGATCGCTCCAGGGTCT 41500 Query 148361 TGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || | || ||| | ||||| |||||| | ||| || |||||||| Sbjct 41501 TGAAGCCGAAGAAGTTGTAGGAGAAATCTCGGTCGAAAATGATGGCCG 41548 >seq594 Length=47165 Score = 96.9 bits (106), Expect = 3e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||||| || | |||||| |||||| |||||||| |||| ||| ||||| | Sbjct 29790 TGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGT 29849 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGT 147603 |||| |||| ||||| ||||| ||| |||||||||||||| Sbjct 29850 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGT 29890 >seq562 Length=198046 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | ||||| || || |||||||||||| | ||| || Sbjct 188454 CAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 188513 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| |||||||| || |||||||| Sbjct 188514 GCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTC 188573 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| || || |||| | || | || ||| | ||||| || || | ||| Sbjct 188574 CTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGT 188633 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || ||||| || || || | || ||||||||| || Sbjct 188634 GATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCT 188676 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || || || || |||||||||||| | ||| || | Sbjct 188686 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 188745 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| |||||||| || |||||||| ||| Sbjct 188746 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTA 188805 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | ||| | Sbjct 188806 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATG 188865 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| || || || | ||| ||||||||| || Sbjct 188866 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGCCT 188904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | ||||| || || |||||||||||| | ||| || Sbjct 185752 CAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCG 185811 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || |||| | |||| || | ||| |||||||| || || ||||| Sbjct 185812 GCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTC 185871 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| || || |||| | || | || ||| | ||||| || || | || Sbjct 185872 CTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGT 185931 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||| || ||||| | || ||||||||| Sbjct 185932 GATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATG 185971 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || || || || |||||||||||| | ||| || | Sbjct 188914 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 188973 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| |||||||| || |||||||| ||| Sbjct 188974 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTA 189033 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | ||| | Sbjct 189034 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATG 189093 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| || || || | || ||||||||| || Sbjct 189094 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCT 189132 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || || || || |||||||||||| | ||| || | Sbjct 189142 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 189201 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| |||||||| || |||||||| ||| Sbjct 189202 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTA 189261 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | ||| | Sbjct 189262 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATG 189321 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| || || || | || ||||||||| || Sbjct 189322 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCT 189360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || || || || |||||||||||| | ||| || | Sbjct 189370 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 189429 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| |||||||| || |||||||| ||| Sbjct 189430 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTA 189489 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | || | Sbjct 189490 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATG 189549 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || ||||| | || |||||||| Sbjct 189550 GTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 189584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || || || || |||||||||||| | ||| || | Sbjct 185528 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 185587 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | | |||| || | ||| |||||||| || |||||||| ||| Sbjct 185588 TCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTA 185647 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | || ||| | ||||| || || | ||| | Sbjct 185648 TCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATG 185707 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| || || || | || ||||||||| || Sbjct 185708 GTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGCCT 185746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476510176298520