Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq9580 183 4e-41 >seq9580 Length=8214 Score = 183 bits (202), Expect = 4e-41 Identities = 146/176 (83%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 || || || | ||| || | ||||||||||||||||| ||||||||| || |||||||| Sbjct 6629 AGTCCCGTGATGTGTGCGATCATGTAGGTGAGCAGCGCGTAGCTGGCGATATTGAAGGGC 6688 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 ||||| ||||||||||| ||||| | |||||||||||| ||||| ||||| |||||| | Sbjct 6689 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 6748 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||| ||||| |||||| |||||| || |||||||||||| ||| ||||| || Sbjct 6749 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGCGCCATGAGGGGGAGGTCTGC 6804 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/163 (74%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 147276 GTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTT 147335 |||| ||| |||||||||||||||||||| |||||||| |||||||||||||| || Sbjct 7273 GTACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACGGGCCCCAGGTCGCCCTCCTC 7332 Query 147336 TCTGTGCGAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 ||| | ||||| |||| | ||| || || || | ||||||| ||| ||||| || Sbjct 7333 TCTCTCGGAGAA-CCCG--AGGTTGTCCAGGAAGTCCCGCGACCCGTTGGCCTCCCAAAT 7389 Query 147393 GCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 ||| || || | ||||||||||| | | ||| || ||| Sbjct 7390 CTTCACCCCTTTCTCCGAGAGCTCCTTGGCATTCGTCGATCCC 7432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583364322424800