Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq562 113 4e-20 >seq562 Length=198046 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 188481 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 188540 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||| ||| |||||| ||||| | Sbjct 188541 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 188600 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| |||||| || || || || | || ||||| Sbjct 188601 CTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCAC 188660 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 188661 AAAGATCTGCAT 188672 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 185552 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 185611 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | || ||||| ||| |||||| ||||| | Sbjct 185612 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 185671 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||||| |||||| || || || || | || |||||| Sbjct 185672 TCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACA 185731 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 185732 AAGATCTGCAT 185742 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 188938 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 188997 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | || ||||| ||| |||||| ||||| | Sbjct 188998 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 189057 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||||| |||||| || || || || | || |||||| Sbjct 189058 TCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACA 189117 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 189118 AAGATCTGCAT 189128 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 189166 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 189225 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | || ||||| ||| |||||| ||||| | Sbjct 189226 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 189285 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||||| |||||| || || || || | || |||||| Sbjct 189286 TCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACA 189345 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 189346 AAGATCTGCAT 189356 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 188710 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 188769 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | || ||||| ||| |||||| ||||| | Sbjct 188770 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 188829 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||||| |||||| || || || || | || ||||| Sbjct 188830 TCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACG 188889 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 188890 AAGATCTGCAT 188900 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 189394 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 189453 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | || ||||| ||| |||||| ||||| | Sbjct 189454 ATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 189513 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||| | ||||| || || || || | ||||||||| Sbjct 189514 TCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACA 189573 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 189574 AAGATCTGCAT 189584 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 185323 CTCCTTCTGGATGTTGTATTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 185382 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | | ||||| ||| |||||| ||||| | Sbjct 185383 GATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTT 185442 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||||| |||||| || || || || | || ||||| Sbjct 185443 CTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCAC 185502 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 185503 GAAGATCTGCAT 185514 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||||||||| || ||||| Sbjct 185779 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 185838 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | | ||||| ||| |||||| ||||| | Sbjct 185839 GATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTT 185898 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||||| | || ||||| | ||||| || || || || | |||||||| Sbjct 185899 CTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 185958 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 185959 AAAGATCTGCAT 185970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450698048661560