Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3008 239 5e-58 seq562 109 6e-19 >seq3008 Length=76608 Score = 239 bits (264), Expect = 5e-58 Identities = 914/1422 (64%), Gaps = 16/1422 (1%) Strand=Plus/Minus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| ||||||| ||||||||| || || || || || |||||||| ||||||| Sbjct 41484 CTACCTGTTGAAGATCAACGGCAAAGTGGCCGAGCGGCCGCAGCACATGCTCATGCGCGT 41425 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | | || || || |||| ||||| ||||| ||| | || |||||| | || |||| Sbjct 41424 GTCCGTCGGGATCCACGAAACGGACATCGACGCGGCCATCGAGACGTACAACCTGCTGTC 41365 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 || ||| || ||||| || |||||| | || ||||||||| ||| ||| || Sbjct 41364 GGAGAGGTGGTTCACCCACGCCTCCCCCACCCTCTTCAACGCGGGCACCAACAGGCCACA 41305 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 41304 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAGGGCATCTACGACAC 41245 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 || | |||||| || ||||||| | ||| || || || || ||| | | Sbjct 41244 CTTGAAGCAGTGCGCCCTCATCTCCAAATCAGCCGGGGGGATCGGCGTGGCCGTCAGCTC 41185 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | ||| | | || ||| ||||| ||||||||| || ||| ||| | | || Sbjct 41184 CATCCGCTCGACGGGCAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTCCC 41125 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGG-GGGA--AAGCGCAA 7940 |||| | | || | ||| ||| ||| ||| | || |||||||| |||| ||| | Sbjct 41124 CATGCTAAGGGTTTACAACAACACGGCGCGTTACGTGGACCAGGGCGGGAACAAGAGACC 41065 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 ||||| ||||| || ||||||| |||||| ||| | | || | || | || Sbjct 41064 CGGCGCTTTCGCCATGTACCTGGAGCCCTGGCACTTTGACGTGTTCGACTTCCTGGAGCT 41005 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 | |||| ||| || || ||| | ||| | || || |||| || ||||| Sbjct 41004 GAAGAAGAACACGGGAAAGGAGGAGCAG-AGAGCCAGGGACCTTTTCTACGCCATGTGGA 40946 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | ||||| ||||| |||| ||| || | | || | ||||| |||||||| ||| Sbjct 40945 TCCCCGACCTGTTCATGAAGCGGGTGGAGAGCAACCAGGACTGGTCCCTCATGTGTCCCA 40886 Query 8120 ATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAAT 8179 | ||||| | | | | || | |||||| | | |||| | Sbjct 40885 ACGAGTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAAAAGCTCTACACGTCCT 40826 Query 8180 ACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTA 8239 |||| | || || | | ||| || || | | | ||| | |||||| | Sbjct 40825 ACGAGAAGGAGGGGAGGGCCAAGCGCGTGGTCAAGTCCCAGCAGCTGTGGCACGCCATCA 40766 Query 8240 TCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCA 8299 |||| | || | ||||||||| | ||| |||||||||||||||||||| |||||| | Sbjct 40765 TCGAGTCCCAGACCGAAACCGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGA 40706 Query 8300 AAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTAC 8359 | ||||| || || |||||||||| | |||||| || ||| | ||||| || Sbjct 40705 AGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCACGGAAATCGTCG 40646 Query 8360 AGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGT 8419 | |||| | | |||||| || ||||| ||||| || || ||||| | ||| || Sbjct 40645 AATACACCAGCCACGACGAGGTCGCCGTCTGCAACCTGGCCTCGGTCGCGCTCAACATGT 40586 Query 8420 TCGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTG---CAAG 8476 || | | | || || || ||| |||||| | || | | |||||| ||| Sbjct 40585 ACG-TCACCCCCGAGCAGAC-CTT-TGACTTTAAGAAACTCGCA---GCCGTGACCAAAG 40532 Query 8477 TGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGC 8536 | | || || || | ||||| || |||| || ||||| || || || | Sbjct 40531 TAATCGTCAAAAACTTGAACAAGATCATCGACATCAACTTCTATCCGGTGCCCGAGGC-C 40473 Query 8537 GCGTA-TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCG 8595 | | || |||| ||||||| | || | || | ||||||||||| |||||||||| Sbjct 40472 GAAAAGTCCAACAGGCGCCACCGGCCGATAGGAATCGGCGTGCAAGGCTTGGCCGACGCC 40413 Query 8596 TTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATA 8655 || | | |||| ||| | ||| |||| ||||| | |||| |||| | || Sbjct 40412 TTCATCCTCATGCGTTACCCGTTCGAGAGCCCCGAAGCTCAGCTGCTGAACACGCAGATC 40353 Query 8656 GCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGC 8715 || || | || |||| ||| | || || ||||| | || ||| || | ||| Sbjct 40352 TTCGAGACCCTCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGC 40293 Query 8716 ACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGG 8775 | ||||| ||||||||||| |||| | |||||| || || |||| |||||||||||| Sbjct 40292 CCCTACGAGACGTACGCGGGCTGCCCCGTCAGCCGGGGCATCCTGCAGTACGACATGTGG 40233 Query 8776 AATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTC 8835 | | ||||||| || | | ||| || |||| || || || | | Sbjct 40232 GAGAAGAAGCCCACCGACCTGCTGGACTGGGGCCTGCTGAAGGAGAAGATCGCCAAGCAC 40173 Query 8836 GGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATG 8895 || || | || ||| || |||| |||||||| ||| | || || || || || Sbjct 40172 GGCGTGAGGAACAGCCTGCTGCTGGCGCCGATGCCCACGGCCTCCACCGCCCAGATCCTG 40113 Query 8896 GGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 || |||||||| ||| | ||||| | ||||| |||| | ||| Sbjct 40112 GGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTAC 40071 >seq562 Length=198046 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 189358 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 189417 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 189418 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189477 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | || || Sbjct 189478 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACC 189537 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | ||||| || || || ||||| || Sbjct 189538 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 189587 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 185516 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 185575 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||||||||| |||| | ||||||||| || || Sbjct 185576 AGGGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGG 185635 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | || || Sbjct 185636 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACC 185695 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 185696 TCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 185742 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 188674 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 188733 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 188734 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 188793 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | || || Sbjct 188794 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACC 188853 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 188854 TCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 188900 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 188902 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 188961 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 188962 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189021 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | || || Sbjct 189022 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACC 189081 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 189082 TCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189128 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| || || || ||||||||||| || |||||||||||| Sbjct 189130 CCTCCCCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 189189 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 189190 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 189249 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | || || Sbjct 189250 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACC 189309 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 189310 TCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189356 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| || || || ||||| ||||| || |||||||||||| Sbjct 185744 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 185803 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 185804 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 185863 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || || | |||||| | || || Sbjct 185864 ATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACC 185923 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | ||||| || || || ||||| || Sbjct 185924 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 185973 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || || |||| ||| || || || ||||| ||||| || |||||||||||| Sbjct 188446 CCTCCCCTCAGGCGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 188505 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | ||||||||| || || Sbjct 188506 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGG 188565 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | || || Sbjct 188566 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACC 188625 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 188626 TCCAGCGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 188672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505291274491640