Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3008 262 5e-65 seq594 102 1e-16 seq14194 86.0 9e-12 seq14193 86.0 9e-12 >seq3008 Length=76608 Score = 262 bits (290), Expect = 5e-65 Identities = 1009/1572 (64%), Gaps = 11/1572 (1%) Strand=Plus/Plus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||||| ||||| || | || | || ||||| || || Sbjct 39976 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTG 40035 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 ||||| || || ||||| || | || || || ||||| || || ||||| || || || Sbjct 40036 ACTATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCG 40095 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 40096 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGC 40155 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || || | ||| || || || || | ||| ||| || Sbjct 40156 AGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGG 40215 Query 68893 TCAGATGG-TACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCC 68951 || | || | | | | ||| | ||||| || || || || || | | || Sbjct 40216 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCCGGCTGACGGGGCAGCC 40274 Query 68952 ATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACC 69011 || || || || || || || | || || || || || ||||| | || | Sbjct 40275 CGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 40334 Query 69012 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGG 69071 ||| || | || ||||| |||| | | || || || ||||| | || ||||| || Sbjct 40335 GTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTCTCGAACGG 40394 Query 69072 ATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATG 69131 ||| | | || || || || || ||||| || || || || || || || || | || Sbjct 40395 GTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTG 40454 Query 69132 TCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 69191 | | | || || |||| || || || | ||||| | || || || || || || || Sbjct 40455 GCGCCTGTTGGACTTTTCGGCCTCGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTT 40514 Query 69192 AAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TCGTC-C 69248 | ||| ||| | |||||| |||| | ||||| ||| ||||| || | | Sbjct 40515 CAAGTTTTTGACGATTACTTTGGTCACGGCTGCGAGTTTCTTAAAGTCAAAGGTCTGCTC 40574 Query 69249 ATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGA 69308 | || |||| || || || || || || || || || || || ||||| | Sbjct 40575 GGGGGTGACGTACATGTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTG 40634 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | | |||| | || || || || || || || | ||||| || |||||||| || Sbjct 40635 GCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTG 40694 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 || || ||||| |||| |||||||| ||||| || || | || || || ||||| | Sbjct 40695 GTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGT 40754 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTT-ATTACGGTCTTGTAACGCT 69487 ||| || ||||| || | | ||| | | || | | || | ||| |||| | | Sbjct 40755 CTGGGACTCGATGATGGCGTGCCACA-GCTGCTGGGACTTGACCACGCGCTTGGCCCTCC 40813 Query 69488 TCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 ||| || || || || || ||| ||| || || || ||||| || |||| | Sbjct 40814 CCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCC 40873 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 | || || || || |||||||| | ||||| | | | || || || ||||| | Sbjct 40874 CGGGGCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCATGA 40933 Query 69608 ATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 | || ||||| ||||| | || || ||| || || |||| ||| | || || ||||| Sbjct 40934 ACAGGTCGGGGATCCACATGGCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCCTTTCCC 40992 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 || || || || || || || || || | | ||| | ||||| || || || || || Sbjct 40993 GTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATG 41052 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | || |||| || || || ||||| || | ||| | || ||||| || || Sbjct 41053 GCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAA 41112 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 || || ||||| || | | || || || || || || || || | || || || || Sbjct 41113 ACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCC 41172 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 | | ||| || || | | | || || || || || ||| ||||| || || Sbjct 41173 GTCGAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCG 41232 Query 69907 CAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAA 69966 || | ||||| ||||| || || ||||| ||||| || || ||||| || || || Sbjct 41233 CACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 41292 Query 69967 CAGCTAGACATTTGATGA-TGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGT 70025 ||||| |||| || | ||| | || ||||| || || | || || || ||||| || Sbjct 41293 CAGCTGGACAGCTGTGGCCTGT-TGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGT 41351 Query 70026 GAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATG 70085 |||||| | || || ||||| ||||| || || || || | || || ||| | || Sbjct 41352 GAACCACCTCTCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTG 41411 Query 70086 AATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTAT 70145 || || | | || ||||| | ||| ||||| || || || || ||| || || Sbjct 41412 GATCCCGACGGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTTGCCGTTGAT 41471 Query 70146 TTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCT 70205 ||||||||||| ||| ||||| || || || || || ||||||| || || |||| Sbjct 41472 CTTCAACAGGTAGGATCGCTCCAGGGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCG 41531 Query 70206 TTCGTAAATAAT 70217 ||| |||| || Sbjct 41532 GTCGAAAATGAT 41543 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||| || || |||||| || | || || || || || || | Sbjct 39642 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 39701 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| ||| || || || || ||||| || || | || |||||||| || | || ||| Sbjct 39702 TCAGCGACTGGCTCTGGTCAATGAAGGCGCCGCGGTCAGCCGCCATCTTGAGTATGGTCT 39761 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||| | || || | | ||| || | ||||||||||| Sbjct 39762 TCTGGGAGATTTCCCAGACGGTTTTGTACAGCTGCTTCAGATCATCTGGAA 39812 >seq594 Length=47165 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 |||||||| || ||||| || |||| || || |||||||| ||||| || ||||| || Sbjct 29801 ATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 29860 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 || |||||||||||||| || || |||| ||||||||||| |||| || || || || Sbjct 29861 TTGCAGGCGTCCTTGTAGAGCATGTACGGTGTACCAGTTTCTGTCTGCGACTCAATGAT 29919 >seq14194 Length=7087 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 39629 CAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGA 39688 ||||| | | |||| ||||| || || | ||||| || || || || || ||||| || Sbjct 3486 CAATG-ATGACCTCGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAGG 3544 Query 39689 CCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACT 39748 || | ||| || ||||| || |||||||| || || ||||| ||||||||||| || || Sbjct 3545 CCTCTCTTCTTCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCACG 3604 Query 39749 GCTGCAAATGCAAC 39762 || || || || || Sbjct 3605 GCAGCGAAGGCCAC 3618 >seq14193 Length=36040 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 39629 CAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGA 39688 ||||| | | |||| ||||| || || | ||||| || || || || || ||||| || Sbjct 33189 CAATG-ATGACCTCGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAGG 33131 Query 39689 CCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACT 39748 || | ||| || ||||| || |||||||| || || ||||| ||||||||||| || || Sbjct 33130 CCTCTCTTCTTCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCACG 33071 Query 39749 GCTGCAAATGCAAC 39762 || || || || || Sbjct 33070 GCAGCGAAGGCCAC 33057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686763201093480