Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8512 102 6e-17 seq7281 100 2e-16 >seq8512 Length=60387 Score = 102 bits (112), Expect = 6e-17 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| |||||||||||| ||||||| ||||||| ||||| ||||||||| |||||||| | Sbjct 2438 CACCGTTGATGGTGAACTTGCTGTCGGTGTAGAGGACCAACTTCTTGATGTTGTTCTCTT 2497 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTG 77523 ||||||| ||| |||||| | || ||||| Sbjct 2498 TGGCTTGTTCCAGCGCTTTGCAGGCTGCCTG 2528 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| |||||||||||| || || ||||||||| || |||||| || |||||| Sbjct 1984 CCAGACCACCTCCAGCTCCCCGTTCAGCCGGTCCAGCTGCACAAAGTCGTCTTTGTTGGT 2043 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430 | | || ||| | ||||| |||||||||| ||||||||||||| ||||| | || Sbjct 2044 GATCGGACCGCCGGACTTCAGCCGCCAGCCGTTCAGCTTCCAGTTCTTCACCCAGCTGGT 2103 Query 77431 CACACC 77436 |||||| Sbjct 2104 CACACC 2109 Score = 95.1 bits (104), Expect = 1e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 |||||| |||||||||||||||| ||| ||| ||||||||||| ||| || || | Sbjct 3397 CTCTGAAGAACGCCCAGGCATCTTTCTCACATGCGAACTTCTTAAAAGAGGCGGCGGGAA 3456 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| || ||||||||||||||||||| Sbjct 3457 ATTTGTCCACCTGGCTCTTACATTCATCCC 3486 >seq7281 Length=200023 Score = 100 bits (110), Expect = 2e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 || ||||||| ||| || || ||| |||| || || || || ||||| |||| |||| | Sbjct 143256 CCCGCTCCCAATTTGCTGAAGTCTCTCTTTGACTGGAAGGTGTAGACCGTCAGTCCAGTA 143315 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||||| || | || || | ||| |||| |||||||||||||||||||||| Sbjct 143316 AACACAGCACAGGTCAGGAACAGGGCTTGCAGTACAGTGGAGTATTCATAGAAGGTCA 143373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 87073 TTTTATTGGTTCTTTATAGATTTTAGTATATGCAATATGCGCATAAAGAGATCGATAATA 87132 ||| | || ||||| ||||| | |||| | ||| ||| ||| ||||| | || ||| Sbjct 142096 TTTCAGTGTTTCTTCATAGAGTCCAGTAGACGCAGGATGTGCAGGAAGAGGTTGACAATG 142155 Query 87133 TCCATGTAAATGTGGATAAATGCTACAATGTATTCGTCAGGAGAAAACTGTTTCATTAGC 87192 |||| ||| | || ||| | || | |||| || || || || | ||| ||||| ||| Sbjct 142156 TCCAGGTAGAGGTTGATGGAGGCCAGGATGTGCTCCTCGGGCGAGAGCTGCTTCATCAGC 142215 Query 87193 TTATGGGTGTCATAAATTATAAAGCCACAGAAAACAACAGCCCC 87236 ||||||||||| || || ||||||||||| | | |||||| Sbjct 142216 AGGTGGGTGTCATAGATGATGAAGCCACAGAAGATCAGAGCCCC 142259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397373860376785