Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq4930 210 8e-50 seq9939 188 3e-43 seq5993 82.4 3e-11 >seq4930 Length=15505 Score = 210 bits (232), Expect = 8e-50 Identities = 221/283 (78%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 22544 CACCGTCTTT-CATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATG 22602 ||||||| | ||||| ||||||||| ||||||||| ||||||||| ||||||||||||| Sbjct 2694 CACCGTCATGACATTGTCATACGGAACTCCGGATGATCATTCATCACGCGGGCAAGAATG 2753 Query 22603 TGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTAC-GGTCTTTAAAAAGGCCGT 22661 | |||| |||| || | | ||||| |||||| | |||| ||||||| ||| |||| Sbjct 2754 GGTATAACGGCCCGACCACAACTGTGCGTATTTTCCCTTACGGGTCTTT-TAAATGCCGC 2812 Query 22662 AATATCCAGCTGAACGGTCTGGTTATAGGTACA-TTGAGCAACTGACTGAAATGCCTCAA 22720 |||||||| || ||||| | | |||| ||||| || || ||||| | ||| ||||| Sbjct 2813 CATATCCAGGTGGACGGTATTGGTATATGTACAGTTTTTCACCTGACCGGGATGTCTCAA 2872 Query 22721 AATGTTCTTTACGATGCCATT-GGGATATATCAACGGTGGTATATCCAGTGA-ttttttt 22778 ||||||||||||||| || || |||| |||||| | | |||||| | || ||||||| Sbjct 2873 AATGTTCTTTACGATCCCTTTGGGGAGATATCATAAGCGATATATCAGGGGAGTTTTTTT 2932 Query 22779 CTCCATTTTAGCTTCCTTAGCTCCTGAAAATCTCGATAACTCA 22821 | |||||||||| ||| || ||||||||||||| ||||| Sbjct 2933 TGCGTTTTTAGCTTCTTTAAATCATGAAAATCTCGATCACTCA 2975 >seq9939 Length=992 Score = 188 bits (208), Expect = 3e-43 Identities = 162/194 (84%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 22565 GGAATTCCGGATGAGCATTCATCAGGCGGGCAAGAATGTGAATAAAGGCCGGATAAAACT 22624 |||| ||||||||||||||| ||||||| || |||||||||||| ||| |||||| || Sbjct 221 GGAACTCCGGATGAGCATTCCCCAGGCGGACAC-AATGTGAATAAACGCCTGATAAACCT 163 Query 22625 TGTGCTTATTTTTCTTTACGGTCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGT 22684 ||||||||||||||| ||||||||||| |||||||||| | || |||||||| ||||| Sbjct 162 -GTGCTTATTTTTCTT-ACGGTCTTTAAGAAGGCCGTAAAACCCCACTGAACGG-CTGGT 106 Query 22685 TATAGGTACATTGAGCAACTGACTGAAATGCCTCAAAATGTTCTTTACGATGCCATTGGG 22744 |||| |||||| |||||||||||||| || | | ||||| || |||| | | || |||| Sbjct 105 TATAAGTACATCGAGCAACTGACTGACATTGCCCCAAATGCTCCTTACCACGTCA-TGGG 47 Query 22745 ATATATCAACGGTG 22758 |||||||| || || Sbjct 46 ATATATCAGCGATG 33 >seq5993 Length=57797 Score = 82.4 bits (90), Expect = 3e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 22173 CATTCTGCCGACATGGAAGC-CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCA 22231 ||||||| ||| |||| |||| | || || || || | |||| |||||| || || Sbjct 57648 CATTCTGAAGACCCCCAAGCGCATCCCGAAGAGCGTGTTGCATCTGATTCGCCAACGTCA 57707 Query 22232 TCAGCACCT-TGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAG 22290 | ||||| ||||||| || ||| | | |||||| || |||||| | ||||||||| Sbjct 57708 TGCGCACCCGTGTCGCCATGAATATCAGACTTGCCCGAGGCGAAAACTGAAGCGAAGAAG 57767 Query 22291 TTGTCCATATTGGCCACGTTTAAATCAAA 22319 |||||| ||| || || | ||||||| || Sbjct 57768 TTGTCCGTATGGGGCAGGATTAAATCGAA 57796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184407659388126