Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3008 163 4e-35 seq594 87.8 2e-12 >seq3008 Length=76608 Score = 163 bits (180), Expect = 4e-35 Identities = 953/1499 (64%), Gaps = 58/1499 (4%) Strand=Plus/Plus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | ||||| |||| || || |||||| Sbjct 39978 CTTCATCTCCTCGTTCCACAGCCCCCTCTCAGTCAGGTCTTTGAGCAGATGGGGGTTGAC 40037 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | |||| || | ||||||||| | ||||| || || | Sbjct 40038 TATCTGGAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGAT 40097 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 40098 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGCAG 40157 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 110851 ||||| | | || | || ||| ||||| || | ||||||| | || | Sbjct 40158 GCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGGTC 40217 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGG--GACGCGGGAGAAC 110909 | | || ||| || |||||||||| |||| || | || || |||| || || | Sbjct 40218 GG-TGGGCTTCTTCT-CCCACATGTCGTACTGCAGGATGCCCCGGCTGACGGGGCAG--C 40273 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 || | | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 40274 CCGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 40333 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || | ||| || ||||| | | |||| | || ||||| || || | Sbjct 40334 CGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTCTCGAACG 40393 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || | || || | || || | ||||| || || | || || || | || Sbjct 40394 GGTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGT 40453 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTC 111146 | ||| | || |||||| || ||| || ||||| || || |||| |||| Sbjct 40454 GGCGCCTGTTGGACTTTTCGGC---CTCGGGCACCGGATAGAAGTTGATGTCGATGATCT 40510 Query 111147 GGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAAAAG 111203 ||| | |||||| || || ||||| | | | ||||| | | | ||||| | Sbjct 40511 TGTTCAAGTTTTTG---ACGATTACTTTGGTCACGGCTGCGAGTTTCTTAAAGTCAAAGG 40567 Query 111204 TGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCG 111263 | | ||| |||| ||| | || |||| || |||| ||||| || || Sbjct 40568 TCTG---CTCGGGGGTGACGTACATGTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGA 40624 Query 111264 TCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCC 111323 ||| || | ||||| || | ||||| || || | |||| ||| || || | Sbjct 40625 CCTCGTCGTGGCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGC 40684 Query 111324 CCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCC 111383 ||| ||||| ||||| |||||| ||||||| || || ||||| |||||||| ||||| | Sbjct 40685 CCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGC 40744 Query 111384 CCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCG 111442 | || || ||||| || | || || || | ||| | | | | | || | || || Sbjct 40745 CGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCTGCTGGGACTTGACCACGCGC- 40803 Query 111443 TTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG 111502 ||||||| |||||| |||||| |||||||| |||||||||||| ||| | || Sbjct 40804 TTGGCCCTCCCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCC-CAGCA 40862 Query 111503 -TCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCA-- 111559 ||| || || || || || ||||| | || ||||| | || || ||| Sbjct 40863 CTCGTCCAGCCCGGGGCACTCGTTGGGACACATGAGGGACCAGT--CCTGGTTGCTCTCC 40920 Query 111560 ACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCC 111619 |||||||||||||| ||||| || ||||||| || | || || || || | | Sbjct 40921 ACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGC 40980 Query 111620 TCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGG 111678 || || | || ||| || | | ||| ||||| || | | || |||||| || Sbjct 40981 TCCTCCTTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGG 41039 Query 111679 CTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCG 111734 ||| || || | |||| || || || | | ||| | || | || || |||| Sbjct 41040 CTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTG-TTCCCGCCCTGGTCCACGTAACGCG 41098 Query 111735 CTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCC 111794 | ||| ||| | || | ||||| || | | || | || | || || || || Sbjct 41099 CCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCC-- 41156 Query 111795 GAATACGAGATTTA-TTGGCTCTC-ACATCATGGATGTG-----CATCCCAATACCCCCA 111847 | ||| || || | || | ||||| || || || || ||||| Sbjct 41157 -----GGCGATGTAGCTGCCCGTCGAGCGGATGGAGCTGACGGCCACGCCGATCCCCCCG 41211 Query 111848 GCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCC 111907 || | || ||||| | || |||| | | | || | ||||| || | ||| ||| Sbjct 41212 GCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCG 41271 Query 111908 TCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG--TCTTGGTGTACCAGCATTGA 111965 ||||| |||||| |||||||| ||||||| ||| || | |||||| || || |||| Sbjct 41272 TCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTG--CCCGCGTTGA 41329 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAG 112024 ||||||| || | ||||| ||||| |||| | |||| | || ||| ||||| | | Sbjct 41330 AGAGGGTGGGGGAGGCGTGGGTGAAC-CACCTCTCCGACAGCAGGTTGTACGTCTCGATG 41388 Query 112025 ACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | || ||||| ||||||| |||| | || ||||||| ||||| ||| || Sbjct 41389 GCCGCGTCGATGTCCGTTTCGTGGATCCCGACGGACACGCGCATGAGCATGTGCTGCGG 41447 >seq594 Length=47165 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 ||||||||||| || ||||| || | ||| || || || |||| ||||| || Sbjct 29788 TGTGTACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTG 29847 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| |||||| ||||||| || ||||||||||||||||| || || || || || ||||| Sbjct 29848 GTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGTGTACCAGTTTCTGTCTG 29907 Query 111397 TGA 111399 || Sbjct 29908 CGA 29910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627898880767200