Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3008 170 2e-37 seq594 95.1 1e-14 >seq3008 Length=76608 Score = 170 bits (188), Expect = 2e-37 Identities = 892/1399 (64%), Gaps = 60/1399 (4%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| ||||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 40072 TAGATGTTGCTGGTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 40131 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | | || | | || ||| Sbjct 40132 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCC 40191 Query 118302 TTGAGAGCGTCCCAGTC------GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355 || || | ||||||| || | || |||| |||||| |||| || || Sbjct 40192 TTCAGCAGGCCCCAGTCCAGCAGGTCGGTGGGCTTCTTCTCCC------ACATGTCGTAC 40245 Query 118356 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 118413 || ||||| || || |||| ||| | ||| | | ||||| || ||||| | Sbjct 40246 TGCAGGATGCCCCGGCTGACGG-GGC-AGCCCGCGTACGTCTCGTAGGGGCCGAGCTCGG 40303 Query 118414 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 | |||| ||| |||||||||| ||||| |||| || | || || || || | | | Sbjct 40304 CGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGT 40363 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 118533 ||| || || ||| | || |||| | || | || || | || || | Sbjct 40364 TCAGCAGCTGAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCA 40423 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-- 118591 ||||| || |||| || || || || || | | | || ||||| ||| ||| Sbjct 40424 AGCCTTGCACGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTT---CGGCCTCGG 40480 Query 118592 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 ||| ||||| || || | ||||| | | | || | |||||| || || || || | Sbjct 40481 GCACCGGATAGAAGTTGATGTCGATGATCTTGTTCAAGTTTTTGACGATTACTTTGGTCA 40540 Query 118651 TTTCATGAAGCTTTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAG 118708 | || |||| ||| ||||| | | ||| |||| ||| | || Sbjct 40541 CGGCTGCGAG--TTTCTTAAAGTCAAAGGTCTG---CTCGGGGGTGACGTACATGTTGAG 40595 Query 118709 GGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTC 118768 |||| || ||||| || || || | | ||| || | ||||| || | ||||| Sbjct 40596 CGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGTCGTGGCTGGTGTATTCGACGATTTC 40655 Query 118769 CGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 |||||| | ||| || | ||| |||||||||| |||| || || ||| |||| Sbjct 40656 CGTGCAGAGGTTGCTGGA--CTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTG 40713 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 || || || ||||| |||||||||||||| || || || || ||||||| || || || Sbjct 40714 CAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCG 40773 Query 118887 TTCCAGACATCGGCAGCTGGCACAGTG-----GCG-TTGGCTCGCCCCTCTTCCTCGTAC 118940 | ||| | || ||||| || || ||| ||||| | |||||| | |||||| Sbjct 40774 TGCCA-----CAGCTGCTGGGAC-TTGACCACGCGCTTGGCCCTCCCCTCCTTCTCGTAG 40827 Query 118941 TTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCT 119000 |||||||| ||||||||| || ||| | ||| ||||| || || | Sbjct 40828 GACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTG 40887 Query 119001 GGGCAGAAGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGA 119058 || || | ||| ||||| | || | ||| |||||||||||||| ||||| |||| Sbjct 40888 GGACACATGAGGGACCA--GTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGA 40945 Query 119059 TCCAGAGCGCCGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 |||| | || |||| || |||| | | ||| || | | ||| || || | Sbjct 40946 TCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTG-TTCTTCTTC 41004 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC- 119176 | ||||| ||||| | | || |||||| || |||||||||| |||| | || Sbjct 41005 AGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCG 41064 Query 119177 -CTTACGACGACCAG-CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATT 119234 | | || | |||||| || || | ||| ||| ||| | || | ||||| Sbjct 41065 GGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATG 41124 Query 119235 GGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGA 119292 || | || || | ||| | ||| || || || ||| || | | | | | || Sbjct 41125 GGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCC--CGTCGAGCGGA 41182 Query 119293 CATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGA 119352 | || | || || || ||||| || | || ||||| | ||||||| | | | Sbjct 41183 TGGAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCA 41242 Query 119353 GACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACA 119412 || ||||||| || ||||| ||| |||| | |||| ||||||||||| |||| Sbjct 41243 AGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACA 41302 Query 119413 TTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT- 119471 || |||||| || || ||||||||||| || || | |||||| ||||| |||| Sbjct 41303 GCTGTGGCCTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAAC-CACCTC 41361 Query 119472 TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATC 119531 | |||| | || ||| ||||| | | | ||| ||||| |||| || |||| Sbjct 41362 TCCGACAGCAGGTTGTACGTCTCGATGGCCGCGTCGATGTCCGTTTCGTGGATCCCGACG 41421 Query 119532 GAGACCCGCATAAACATGT 119550 || || ||||| | ||||| Sbjct 41422 GACACGCGCATGAGCATGT 41440 >seq594 Length=47165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 28794 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTTCCCAGGATCTGGGCGGTGGAA 28853 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 |||||||||||||| |||| ||| || ||||| Sbjct 28854 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 28885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618304114928920