Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3008 161 1e-34 seq14194 84.2 3e-11 seq14193 84.2 3e-11 >seq3008 Length=76608 Score = 161 bits (178), Expect = 1e-34 Identities = 950/1501 (63%), Gaps = 62/1501 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||||||| || |||| || || | ||||| || | | | Sbjct 41447 CCGCAGCACATGCTCATGCGCGTGTCCGTCGGGATCCACGAAACGGACATCGACGCGGCC 41388 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | |||| | |||| ||||| ||||| | || |||||||| Sbjct 41387 ATCGAGACGTACAACCTGCTGTCGGAGAGGTG-GTTCACCCACGCCTCCCCCACCCTCTT 41329 Query 104341 CAATGCTGGTACACCAAGACCCCAAA--TGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||| || || |||||| | ||| | ||||||| |||||||| |||||| ||||| Sbjct 41328 CAACGCGGG--CACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGAC 41271 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| ||| | || ||||| | || | | | |||| || | ||||| || | || Sbjct 41270 GACAGCATCGAGGGCATCTACGACACCTTGAAGCAGTGCGCCCTCATCTCCAAATCAGCC 41211 Query 104459 GGGGGTATTGGGATG-----CACATCCATGATGT-GAGAGCCAA-TAAATCTCGTATTCG 104511 ||||| || || || || ||||| | || | || || ||| | Sbjct 41210 GGGGGGATCGGCGTGGCCGTCAGCTCCATCCGCTCGACGGGCAGCTACATCGCC------ 41157 Query 104512 GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGC 104571 || || || || | || | || | | || ||||| | || | ||| ||| || Sbjct 41156 -GGCACCAACGGCAACTCCAACGGGCTCGTCCCCATGCTAAGGGTTTACAACAACACGGC 41098 Query 104572 GCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGC 104627 ||| || || | || | ||| | | || || || |||| | || || |||| Sbjct 41097 GCGTTACGTGGACCAGGGCGGGAA-CAAGAGACCCGGCGCTTTCGCCATGTACCTGGAGC 41039 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 | |||||| || | | || ||||| ||| || ||| || | |||||| Sbjct 41038 CCTGGCACTTTGACGTGTTCGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGC 40979 Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 | | | | || || |||| ||| | ||||| || || || ||||||||| | || Sbjct 40978 AGAGAGCCAGGGACCTTTTCTACGCCATGTGGATCCCCGACCTGTTCATGAAGCGGGT-- 40921 Query 104748 AGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-T 104803 |||||| | | ||||| ||| | ||||| || || || || || ||| | Sbjct 40920 -GGAGAGCAACCAGGACTGGTCCCTCATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGT 40862 Query 104804 GCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACT 104863 || | ||| |||||||||||| || ||||| |||||| | || || |||| | Sbjct 40861 GCTGGGGG-GAGGAGTTTGAAAAGCTCTACACGTCCTACGAGAAGGAGGGGAGGGCCAAG 40803 Query 104864 -GCGACG----GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 104918 ||| | || ||||| || ||||| | || || || |||| || ||||| | Sbjct 40802 CGCGTGGTCAAGTCCCAGCAGC-----TGTGGCACGCCATCATCGAGTCCCAGACCGAAA 40748 Query 104919 CTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 104978 | || || ||||||||||| |||||||||||||| ||| ||||| || || ||||| Sbjct 40747 CCGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCACCAGAATC 40688 Query 104979 TGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 105038 |||| |||||| ||| ||||| || |||||| | |||| || | | || | Sbjct 40687 TGGGCACCATCAAGTCCAGCAACCTCTGCACGGAAATCGTCGAATACACCAGCCACGACG 40628 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098 || || || || ||||| || || |||| ||| || ||| || || ||| Sbjct 40627 AGGTCGCCGTCTGCAACCTGGCCTCGGTCGCGCTCAACATGTACGTCACCCCCGAG---C 40571 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 |||| ||||| | | | |||||| | || || ||| || ||||||| | |||| Sbjct 40570 AGACCTTTGACTTTAAGAAACTCGCAGCCGTGACCAAAGTAATCGTCAAAAACTTGAACA 40511 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAA-TCTAATATGAGA 105214 | || || | || || || || || ||| | || ||| || || | | | Sbjct 40510 AGATCATCGACATCAACTTCTATCCGGTGCCCGAGGC----CGAAAAGTCCAACAGGCGC 40455 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 ||||| || || || |||| || || || | || || | ||||| || || || Sbjct 40454 CACCGGCCGATAGGAATCGGCGTGCAAGGCTTGGCCGACGCCTTCATCCTCATGCGTTAC 40395 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 | || || | |||||| || | || ||| || || |||||| | || || Sbjct 40394 CCGTTCGAGAGCCCCGAAGCTCAGCTGCTGAACACGCAGATCTTCGAGACCCTCTACTAC 40335 Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 ||||| || |||||||| | ||| |||| | | || || || || || | | | Sbjct 40334 GCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCG 40275 Query 105395 GGTTCTCCAGCTTCACAAGGGG--TGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC 105452 || || | | ||| |||| | || || | || ||||||| || || || | | Sbjct 40274 GG--CTGCCCCGTCAGCCGGGGCATCCTGCAGTACGACATGTGGG-AGAAGAAGCCCACC 40218 Query 105453 TTCACTAC--GACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 105510 | || | ||||||| || ||||| ||| || | || | | ||||| Sbjct 40217 GAC-CTGCTGGACTGGGGCCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGGAACAG 40159 Query 105511 TCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 105570 || || |||| || ||||| || ||||||||||| || ||| |||| || || || | Sbjct 40158 CCTGCTGCTGGCGCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 40099 Query 105571 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 105630 | | || |||||||| | |||||||| | || |||| | || ||||| ||| Sbjct 40098 CATCGAGCCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGAGTTCCAGAT 40039 Query 105631 TGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAA 105690 |||||| ||||| | | ||||| | |||| || || ||| | |||| ||||| Sbjct 40038 AGTCAACCCCCATCTGCTCAAAGACCTGACTGAGAGGGGGCTGTGGAACGAGGAGATGAA 39979 Query 105691 G 105691 | Sbjct 39978 G 39978 >seq14194 Length=7087 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 3603 GTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGGC 3544 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || |||||||||||||| ||| | ||||||| Sbjct 3543 CTGATGCCCGGCCTGACTTTCTCCAACGAGCTGATCAGCAGAGACGAGG 3495 >seq14193 Length=36040 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||| ||||||||||||||||||||| || || | ||||| |||||| |||| Sbjct 33072 GTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGGC 33131 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 || ||||| || || |||||||||||||| ||| | ||||||| Sbjct 33132 CTGATGCCCGGCCTGACTTTCTCCAACGAGCTGATCAGCAGAGACGAGG 33180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583137170582680