Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2666 239 1e-57 seq512 158 4e-33 seq1085 98.7 3e-15 >seq2666 Length=112169 Score = 239 bits (264), Expect = 1e-57 Identities = 951/1477 (64%), Gaps = 31/1477 (2%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || |||||| | || || || ||||||||||||| ||||| || ||| || Sbjct 111379 ATTGGCATCGATCTGGGCACCACCTATTCTTGTGTTGGTGTTTTCCAGCATGGCAAAGTG 111320 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || || ||||| || || || ||||| || || || || Sbjct 111319 GAGATCATCGCCAACGACCAGGGAAACAGGACCACTCCCAGCTACGTGGCCTTCACAGAC 111260 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || ||| | | ||||| ||| |||| || || |||| || ||||| | || || Sbjct 111259 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAAGTCGCCATGAATCCCACCAACACC 111200 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAA-TCTACACAATCTGA 349440 | |||||||| ||||| || ||||| |||| ||| ||| || | || || || Sbjct 111199 ATCTTTGATGCCAAGCGGCTCATTGGGAGAAAGTTTAACGACGCCGTCGTC-CAGTCCGA 111141 Query 349441 TCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGT 349500 | |||| | ||||| | || | || | || || ||||| | | |||| Sbjct 111140 CATGAAACTCTGGCCTTTCAAGGT-GATC--AGCGATAATGGAAAACCCAAAGTCCAGGT 111084 Query 349501 TGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAG-AAATTTCATCAATGGTTTTA 349558 || |||||||| || || || | || |||||| || |||| || || ||||| | Sbjct 111083 GGACTATAAAGGGGAGACCAAGGCC--TTCTACCCGGAGGAAATCTCCTCCATGGTCCTT 111026 Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618 |||||||||||||| |||||||| || || | || | || | |||| || || Sbjct 111025 GTTAAAATGAAGGAGATTGCTGAGGCCTACCTGGGACAGGGTGTGTCGAATGCAGTCATC 110966 Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678 || || || || ||||| ||||| ||||| | || || |||||||| || || Sbjct 110965 ACAGTTCCGGCTTATTTCAATGACTCCCAGAGGCAAGCCACCAAAGATGCCGGGGTGATC 110906 Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738 |||| | |||||||| || || || || || ||||| || ||||| || || || || Sbjct 110905 TCGGGTCTGAATGTTCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGC 110846 Query 349739 CTTGATAAAATGAGTGACCAAGaaaaa---aaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || || || | || | || | | ||| | || || || ||| | ||||| || Sbjct 110845 CTGGACAA---GGGTAAAAGAGGAGAGCGCAATGTGCTCATCTTCGATCTCGGTGGAGGC 110789 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || || || || | || || |||| || || || ||||| || ||||| || || Sbjct 110788 ACCTTCGACGTGTCCATCCTGACCATTGAGGATGGCATCTTTGAGGTGAAAGCCACCGCA 110729 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 || || || || ||||| || || || ||||| || || | || || ||||| | Sbjct 110728 GGAGACACGCACCTTGGCGGGGAGGACTTTGACAACCGGATGGTCAACCACTTTGTGGAG 110669 Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTA 349975 || || || | || ||| | || || | | ||| |||||| || | | || Sbjct 110668 GAGTTCAAAAGAAAACATAAGAAGGACATCAGCGGCAATAAGAGAGCAGTGAGGAGACTG 110609 Query 349976 AGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAA 350035 | ||||| ||||| | || ||| | || |||| || | ||||| || ||||| Sbjct 110608 CGTACTGCTTGTGAGAGAGCAAAGAGGACCCTATCCTCCAGCACCCAGGCCAGCATTGAG 110549 Query 350036 ATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAA 350095 || || ||||| || |||| || |||| | || || || | || |||||||| Sbjct 110548 ATCGACTCTCTGTTCGAGGGCATCGACTTCTACACCTCCATCACCAGGGCACGGTTTGAG 110489 Query 350096 GAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 || | || || || || | |||| |||| || ||||| || | | ||||| Sbjct 110488 GAGCTCAACTCAGAGCTCTTCAGGGGAACACTGGAGCCAGTGGAGAAGGCCCTGCAAGAT 110429 Query 350156 GCAAAAATGTCCAAAAATCA--GATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTA 350213 || || || | |||||| ||| ||||| | || ||||||| || || ||| | | Sbjct 110428 GCCAAGCTGG--ATAAATCAAAGATCCATGAAATTGTCCTAGTTGGCGGCTCAACAAGAA 110371 Query 350214 TTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCA 350272 |||| ||| | || || | ||| || |||||||||||| ||||| | ||| | Sbjct 110370 TTCCCAAAATCCAGAAGCTCCTACAAGACTTTTTTAATGGCCGAGAACTGAACAAGAGC- 110312 Query 350273 ATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TTTATCTGG 350331 || || || ||||||||||| || || || || || || ||||| | || | || || Sbjct 110311 ATCAACCCGGATGAAGCTGTGGCGTACGGCGCAGCGGTCCAGGCCGCCATCCTCATGGGG 110252 Query 350332 ---AAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCT 350388 | | |||| || | | ||||| | || || ||||| ||||||| || || Sbjct 110251 GACACCTCAGAG----AACGTCCAAGATCTGCTGCTGCTGGATGTGGCTCCACTGTCTCT 110196 Query 350389 TGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACC 350448 || | || || | || | || ||||| || || |||| | || | || Sbjct 110195 GGGCATTGAGACGGCCGGCGGGGTTATGACGCCGCTAATCAAACGAAACACCACCATCCC 110136 Query 350449 TACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCA 350508 | || || |||| | || || |||| | |||| |||||||||| || ||||| Sbjct 110135 ATCCAAGCAGACCCAGATCTTCTCCACATATTCAGACAATCAGCCAGGTGTGCTGATTCA 110076 Query 350509 AGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAA-TTTACCC 350567 || | ||| || || | || || || || || || ||||| || ||| | Sbjct 110075 GGTGTATGAGGGCGAGAGGGCCATGACCAAGGACAACAA-CCTCTTGGGCAAGTTTGATC 110017 Query 350568 TAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTG 350627 | | || || || || || ||||| || || || |||| ||| | ||||| | | Sbjct 110016 TCACTGGTATCCCTCCCGCTCCCAGAGGGGTACCACAAGTTGAGGTCACATTCGACGTGG 109957 Query 350628 ATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 || | || || ||| ||||||| |||| || || || Sbjct 109956 ATGCCAACGGCATTCTAAATGTGTCCGCCGTCGACAA 109920 >seq512 Length=435775 Score = 158 bits (174), Expect = 4e-33 Identities = 356/535 (67%), Gaps = 0/535 (0%) Strand=Plus/Plus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || ||||| | |||||||| || |||||||| || | | || ||||||| || Sbjct 260687 CTAATCTTTGACCTTGGTGGTGGCACCTTTGATGTGTCCATCTTGACCATTGAAGATGGT 260746 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || ||||| || || | ||||| || ||||||||||||||||| ||||||||||| || Sbjct 260747 ATCTTTGAGGTAAAGTCCACTGCCGGAGATACACATCTTGGTGGGGAAGATTTTGACAAC 260806 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGAT 349951 || | || || || || || || ||||| || || | || || | || Sbjct 260807 CGCATGGTCAACCACTTCATTGCTGAGTTCAAGCGCAAATACAAGAAGGACATCAGCGAC 260866 Query 349952 AATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCA 350011 || |||||| | ||||| || | || || || || || || ||||| |||| || Sbjct 260867 AACAAGAGAGCAGTCCGTCGGCTGCGCACAGCATGCGAGCGGGCAAAGCGCACCTTGTCT 260926 Query 350012 TCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCA 350071 || | || || || |||||||||||| ||| | ||| || ||||||| | Sbjct 260927 TCCAGCACTCAGGCCAGTATTGAAATTGACTCTTTGTATGAGGGAGTCGATTTCTACACC 260986 Query 350072 TCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGAT 350131 || || || | ||||| ||||| || | || || || | | || ||||| Sbjct 260987 TCCATCACCAGGGCTCGTTTTGAGGAGCTCAACGCCGACCTCTTCCGTGGCACCTTGGAT 261046 Query 350132 CCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTT 350191 || |||||||| | | ||||| || ||| ||| |||||| |||| | || Sbjct 261047 CCCGTGGAAAAGTCACTCCGGGATGCCAAGATGGACAAGGGGCAGATTCATGACATTGTG 261106 Query 350192 TTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAAT 350251 ||||| ||||| || || ||||| || || | || || | || || || || ||| Sbjct 261107 TTAGTCGGTGGCTCAACCCGTATCCCGAAGATCCAGAAGCTTCTCCAGGATTTCTTCAAT 261166 Query 350252 GGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTG 350306 || || || | | | | |||||||||||||||||||| || ||||| |||| Sbjct 261167 GGGAAGGAGCTTAACAAAAGCATTAATCCAGATGAAGCTGTGGCTTATGGGGCTG 261221 Score = 96.9 bits (106), Expect = 1e-14 Identities = 185/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 183518 ATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGATAATGTTCTTTTAGCTCG 183577 ||| || || ||||||||||| | || || || || || || | || || || Sbjct 260965 ATACAAAGAGTCAATTTCAATACTGGCCTGAGTGCTGGAAGACAAGGTGCGCTTTGCCCG 260906 Query 183578 TTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCTTGTTTATG 183637 || |||||||| | || ||||| | || ||| || || | || || | || | Sbjct 260905 CTCGCATGCTGTGCGCAGCCGACGGACTGCTCTCTTGTTGTCGCTGATGTCCTTCTTGTA 260846 Query 183638 TTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCTTCACCACC 183697 ||| | || || |||| ||| || || | | | | | ||||||||||| ||||| Sbjct 260845 TTTGCGCTTGAACTCAGCAATGAAGTGGTTGACCATGCGGTTGTCAAAATCTTCCCCACC 260786 Query 183698 TAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATTTAAAAT 183757 | ||||||||| || ||||| | || || ||||| || || |||||||| | || || Sbjct 260785 AAGATGTGTATCTCCGGCAGTGGACTTTACCTCAAAGATACCATCTTCAATGGTCAAGAT 260726 Query 183758 TGATACATCAAATGTACCACCACCCAAATCAAA 183790 || |||||||| || |||||||| | ||||| Sbjct 260725 GGACACATCAAAGGTGCCACCACCAAGGTCAAA 260693 >seq1085 Length=158075 Score = 98.7 bits (108), Expect = 3e-15 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||||| || || || || || || ||||| ||||||| || || ||||||| Sbjct 35985 ATGCAGTTATCACAGTTCCTGCTTACTTCAATGACTCCCAGCGGCAAGCCACCAAAGATG 36044 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 | || | |||||| || | ||||| || | || || ||||| |||||||||||||| | Sbjct 36045 CCGGAACCATTGCCGGTCTCAATGTGCTGCGTATCATCAATGAGCCCACTGCTGCAGCCA 36104 Query 349728 TTGCATATGGGCTTGATAAAATGAGTGAC 349756 |||| ||||| || || |||| | ||||| Sbjct 36105 TTGCTTATGGCCTGGACAAAAAG-GTGAC 36132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514925193461471