Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3008 437 1e-117 seq14194 109 6e-19 seq14193 109 6e-19 seq594 91.5 2e-13 seq2247 89.7 6e-13 >seq3008 Length=76608 Score = 437 bits (484), Expect = 1e-117 Identities = 970/1436 (68%), Gaps = 43/1436 (3%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| ||| || ||| |||||||||| | ||||| ||||||| | ||| Sbjct 40044 GAACTCCCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGGCTCGATGGACTC 40103 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||||||||| ||||| || ||||| || || | ||| || || Sbjct 40104 GTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTT 40163 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAG---GCC---GTCCCAAAATTCATTCGC 78680 || | || ||| | ||||| |||| || ||| |||| | || | | Sbjct 40164 CCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGGCCCCAGTCCAGCAGGTCGGTGGG 40223 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCG-ACCCCTTGAACG 78739 | || |||||||||| || ||||| ||| ||| | ||| | | ||| | ||| Sbjct 40224 CTTCTTCTCCCACATGTCGTACTGCAGGATGCCC-CGGCTGACGGGGCAGCCCGCGTACG 40282 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799 ||||||| | || ||| ||| || ||||| | | |||||| |||| ||| | Sbjct 40283 TCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGA 40342 Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGT-CTCGTCGAACGA--AAGGC 78856 | ||||||||| | |||| ||| | || | || ||| ||||||| || || Sbjct 40343 GGGTCTCGAAGATCTGCGTGTTCAGCAGCTGAGCTTCGGGGCTC-TCGAACGGGTAACGC 40401 Query 78857 CGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCA 78916 | | |||||| | ||||||| ||| || |||||||| | ||||| ||||||||| Sbjct 40402 --ATGAGGATGAAGGCGTCGGCCAAGCCTTGCACGCCGATTCCTATCGGCCGGTGGCGCC 40459 Query 78917 TGTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCA 78973 ||||| |||| |||| |||| | || || ||||| ||||||| ||||| Sbjct 40460 TGTTGGACTTTTCGGCC---TCGGGCACCGGATAGAAGTTGATGTCGATGATCTTGTTCA 40516 Query 78974 GGTTACGCGTGACGA---CCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTC 79030 ||| |||||| | ||||| | | ||| || ||||| | | | Sbjct 40517 AGTTTT---TGACGATTACTTTGGTCACGGCTGCGAGTTTCTTAAAGTCAAA--GGTCTG 40571 Query 79031 CTT-----TGATGAAAGTCGGTAGGCAC-AGCGATGCCAGGTTGCACACGGCCGTCTCGT 79084 || ||| | | | | | || | | ||| ||||||||||| ||||| ||||| Sbjct 40572 CTCGGGGGTGACGTACAT-GTTGAGCGCGACCGAGGCCAGGTTGCAGACGGCGACCTCGT 40630 Query 79085 CCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGT 79144 | |||| | |||| |||||| ||||| | || |||||||||||||| | | Sbjct 40631 CGTGGCTGGTGTATTCGACGATTTCCGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGAT 40690 Query 79145 TCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCT 79204 ||| |||||||||||| ||| |||||||| ||||| |||||| ||||| ||||| | Sbjct 40691 TCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCGGTTT 40750 Query 79205 CAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACC 79264 | ||| || || | | ||| ||| | | | ||| | ||| || |||| || Sbjct 40751 CGGTCTGGGACTCGATGATGGCGTGCCACAGCTGCTGGGACTTGACCACGCGCTTGGCCC 40810 Query 79265 GACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCA 79324 |||| |||| | | ||| | || | || ||||||| || ||| || Sbjct 40811 TCCCCTCCTTCTCGTAGGACGTGTAGAGCTTTTCAAACTCCTCCCCCCAGCACTCGTCCA 40870 Query 79325 GGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCA 79384 | || |||||||||| || ||||| ||| |||||||| || |||| ||| || || Sbjct 40871 GCCCGGGGCACTCGTTGGGACACATGAGGGACCAGTCCTGGTTGCTCTCCACCCGCTTCA 40930 Query 79385 TGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGC 79444 |||| ||||| |||||||||| ||| ||| ||||| | | | | |||||| | | Sbjct 40931 TGAACAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTC 40990 Query 79445 CCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGA 79504 || |||| |||||| || ||||| | | ||| |||||| |||||||| || | Sbjct 40991 CCGTGTTCTTCTTCAGCTCCAGGAAGTCGAACACGTCAAAGTGCCAGGGCTCCAGGTACA 41050 Query 79505 TGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGA 79564 ||||||| | || | |||| |||||||||| ||||| || |||||||||||| Sbjct 41051 TGGCGAAAGCGCCGGGTCTCTTGTTCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGT 41110 Query 79565 AAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTAC 79624 |||| | |||||||| |||| |||| || | |||||| || ||| ||| | | Sbjct 41111 AAACCCTTAGCATGGGGACGAGCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGC 41170 Query 79625 CGCTCGCCCGAATGTTCGAGCAGTGG---ATTCCGATGCCCCCGGACCACTTGGAGATGT 79681 | ||| || ||| |||| | | | ||||| ||||||| | ||||||||| Sbjct 41171 CCGTCGAGCGGATG---GAGCTGACGGCCACGCCGATCCCCCCGGCTGATTTGGAGATGA 41227 Query 79682 GCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCA 79741 | ||||||| ||| | || ||||||||||||||||| |||||||||||| |||| || Sbjct 41228 GGGCGCACTGCTTCAAGGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATGGCGAGCA 41287 Query 79742 GGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801 |||||||||| |||| |||||| |||| || || |||||||||||||| || | |||| Sbjct 41288 GGAAGCAGCTGGACAGCTGTGGCCTGTTGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGT 41347 Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCG-GGAGGTCGTCG 79860 | ||||| || | | || ||| | ||||||||| || | |||| || ||| Sbjct 41348 GGGTGAACCACCTCTCCGACAGCAGGTTGTACGTCTCGATGGC-CGCGTCGATGTCCGTT 41406 Query 79861 CCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATT 79916 ||||||| ||||| | |||||||||| | || ||| ||| |||| | || || Sbjct 41407 TCGTGGATCCCGACGGACACGCGCATGAGCATGTGCTGCGGCCGCTCGGCCACTTT 41462 Score = 324 bits (358), Expect = 2e-83 Identities = 936/1429 (66%), Gaps = 45/1429 (3%) Strand=Plus/Minus Query 19069 CCTGCAGAAGGGCTACCTCAACGAGGGTGAGACGCCTCAGTACCTTTTCATGCGAGTCGC 19128 |||| |||| | || ||| | || ||| ||| ||| || | ||||||| || | Sbjct 41481 CCTGTTGAAGATCAACGGCAAAGTGGCCGAGCGGCCGCAGCACATGCTCATGCGCGTGTC 41422 Query 19129 GGTCGGCATCCATGGCGACGACCTCC-CGCGAGTCCGCGAGACATACGACCTGATGAGCC 19187 ||||| ||||| | ||| || |||| | | |||||| ||| ||||| || Sbjct 41421 CGTCGGGATCCACGAAACGGACATCGACGCG-GCCATCGAGACGTACAACCTGCTGTCGG 41363 Query 19188 AGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGA 19247 ||| || ||||| ||||| | || ||||| |||||||| || || |||| || ||| Sbjct 41362 AGAGGTGGTTCACCCACGCCTCCCCCACCCTCTTCAACGCGGGCACCAACAGGCCACAGC 41303 Query 19248 TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGC 19307 |||| ||||| ||||| | || |||||||| |||||||| |||||||||||||| || Sbjct 41302 TGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAGGGCATCTACGACACCT 41243 Query 19308 TCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG---GATCCACTGCTCGA 19364 | ||| ||||||| | ||||||||| | ||||||| ||||| | | | |||| Sbjct 41242 TGAAGCAGTGCGCCCTCATCTCCAAATCAGCCGGGGGGATCGGCGTGGCCGTCAGCTC-- 41185 Query 19365 ATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCC 19424 ||||| |||| || | ||| || || ||||| || |||| |||||| Sbjct 41184 -CATCCGCTCGACGGGCAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGCTCGTCC 41126 Query 19425 CAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCA 19484 | ||||| | || | |||||||||||| | ||||| ||||||| || ||| | Sbjct 41125 CCATGCTAAGGGTTTACAACAACACGGCGCGTTACGTGGACCAGGGCGGGAACAAGAGAC 41066 Query 19485 AGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAAC 19544 ||| | |||||||| ||||| ||||| |||||| ||||| | || ||||| || | Sbjct 41065 CCGGCGCTTTCGCCATGTACCTGGAGCCCTGGCACTTTGACGTGTTCGACTTCCTGGAGC 41006 Query 19545 TGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGA 19604 || |||| ||| | |||||| | | | ||||| ||| ||| |||||| Sbjct 41005 TGAAGAAGAACACGGGAAAGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGCCATGTGGA 40946 Query 19605 TTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGC 19664 | || ||||| |||||| || ||| |||| || | || ||| ||| ||||| || Sbjct 40945 TCCCCGACCTGTTCATGAAGCGGGTGGAGAGCAACCAGGACTGGTCCCTCATGTGTCCCA 40886 Query 19665 ACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTT 19724 |||| ||||| || || ||| || || |||| ||| | || | ||| | | | Sbjct 40885 ACGAGTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTTGAAAAGCTCTACACGTCCT 40826 Query 19725 ACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCC 19784 ||| |||| || |||| |||||| | ||| | | | ||| || | || Sbjct 40825 ACGAGAAGGAGGGGAGGGCCAAGCGCGTGGTCAAGTCCCAGCAGCTGTGGCACGCCATCA 40766 Query 19785 TCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCA 19844 || | |||| ||| |||||||| || |||||| ||||| |||||| ||| | Sbjct 40765 TCGAGTCCCAGACCGAAACCGGCACGCCATACATGCTGTACAAAGACGCCTGCAACAGGA 40706 Query 19845 AGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGG 19904 || || || |||| | ||| | |||||||| |||||| || || |||||| | | Sbjct 40705 AGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCACGGAAATCGTCG 40646 Query 19905 AGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGACTT 19964 | ||| | |||||| ||||| || || ||||| || | || | | Sbjct 40645 AATACACCAGCCACGACGAGGTCGCCGTCTGCAACCTGGCCTCGGTCGCGCTCAACATGT 40586 Query 19965 TCGTCAAGGCCTCC------TCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGG--- 20015 ||||| || || |||| |||||| ||| | | |||||| | Sbjct 40585 ACGTCA---CCCCCGAGCAGACCTTTGACTTTAAGAAACTCGCAGCCGTGACCAAAGTAA 40529 Query 20016 TCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGCGG 20072 |||||| || |||| ||||||| ||||| || || | ||||||| | Sbjct 40528 TCGTCA---AAAACTTGAACAAGATCATCGACATCAACTTCTATCCGGTGCCCGAGGCCG 40472 Query 20073 CGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACG 20132 ||||| || | ||||||||||||||| | |||||||| || ||| ||||||||| Sbjct 40471 ---AAAAGTCCAACAGGCGCCACCGGCCGATAGGAATCGGCGTGCAAGGCTTGGCCGACG 40415 Query 20133 TTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCA 20192 ||||| | | | | | ||||| ||| | || | ||| |||| | | Sbjct 40414 CCTTCATCCTCATGCGTTACCCGTTCGAGAGCCCCGAAGCTCAGCTGCTGAACACGCAGA 40355 Query 20193 TCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG---TGCGAACTCGCCAAAGAGG 20249 |||||||| || | ||| |||| || |||||| || ||||| || ||| ||| Sbjct 40354 TCTTCGAGACCCTCTACTACGCCGC---CCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGC 40298 Query 20250 ACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG-CGTCCGAGGGTATCCTCCAGCCGGAC 20308 |||||| |||||||||| | ||| | |||| | ||| ||| ||||| ||| ||| Sbjct 40297 TCGGCCCCTACGAGACGTACGCGGGCTGCCCCGTCAGCCG-GGGCATCCTGCAGTACGAC 40239 Query 20309 ATGTGGG-------GCGTCACTGAGAATGAGTTTTGGAGCGCCCTCAAGGTTGAGATCAA 20361 ||||||| || ||| || | ||| || || |||| ||||| Sbjct 40238 ATGTGGGAGAAGAAGC-CCACCGACCTGCTGGACTGGGGCCTGCTGAAGGAGAAGATCGC 40180 Query 20362 GACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCA 20421 | ||||| | | ||| |||| | ||||| ||||| || ||||| |||||||| Sbjct 40179 CAAGCACGGCGTGAGGAACAGCCTGCTGCTGGCGCCGATGCCCACGGCCTCCACCGCCCA 40120 Query 20422 GATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 |||| |||| ||||||||| | ||||||| ||||| | |||||||||| Sbjct 40119 GATCCTGGGCAACAACGAGTCCATCGAGCCCTACACCAGCAACATCTAC 40071 >seq14194 Length=7087 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| || |||||||||||||| || ||| ||| || |||||||| || ||| | || Sbjct 3604 CGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 3545 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| |||||||||||||||||| | | ||||||| Sbjct 3544 CCTGATGCCCGGCCTGACTTTCTCCAACGAGCTGATCAGCAGAGACGAGG 3495 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| || |||| ||||||| |||||| |||| ||||||||| Sbjct 2852 ATCTACCGGGTGGAGAACCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGGAAGACC 2793 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 2792 AACTTCTTTGAGAAGCGTGTGGGCGAGTA 2764 >seq14193 Length=36040 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| || |||||||||||||| || ||| ||| || |||||||| || ||| | || Sbjct 33071 CGTGGAGGGCATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 33130 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||| ||||| ||||||| |||||||||||||||||| | | ||||||| Sbjct 33131 CCTGATGCCCGGCCTGACTTTCTCCAACGAGCTGATCAGCAGAGACGAGG 33180 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| || |||| ||||||| |||||| |||| ||||||||| Sbjct 33823 ATCTACCGGGTGGAGAACCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGGAAGACC 33882 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 33883 AACTTCTTTGAGAAGCGTGTGGGCGAGTA 33911 >seq594 Length=47165 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| |||||||||| ||| || || |||||||| | |||| ||||||||| Sbjct 29794 CTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGTTGCT 29853 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| ||||||||| || || || || Sbjct 29854 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGTGTACCAGTTTC 29901 >seq2247 Length=89140 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||| |||||||||||||||||||| ||| | | || | |||||||| ||| | || Sbjct 52836 GTGGAGGGAATCTTCTTCTCTGGCTCTTTCGCTTCCATCTATTGGCTCAAGAAGAGAGGG 52895 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 | ||||| ||||| | | |||||||||||||||| | | ||||||| Sbjct 52896 TTGATGCCCGGCCTTACCTACTCCAACGAGCTGATTAGCAGAGACGAGG 52944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548408533312080