Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3008 224 1e-53 seq14194 95.1 1e-14 seq14193 95.1 1e-14 seq2427 82.4 8e-11 >seq3008 Length=76608 Score = 224 bits (248), Expect = 1e-53 Identities = 521/776 (67%), Gaps = 12/776 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTAC 53251 |||||||||| || | || ||||||| ||| | ||||| | | ||||||||| Sbjct 41434 TCATGCGCGTGTCCGTCGGGATCCACGAAACGGACATCGACGCG-GCCATCGAGACGTAC 41376 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | || | | || || || |||||| | || ||||| |||||||| || || Sbjct 41375 AACCTGCTGTCGGAGAGGTGGTTCACCCACGCCTCCCCCACCCTCTTCAACGCGGGCACC 41316 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || || ||| |||| |||||||||||| | || |||||||| ||| ||||| ||| Sbjct 41315 AACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAGGGC 41256 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT- 53430 |||||||| || | ||| |||| |||| ||||||||| | | || || ||||| | Sbjct 41255 ATCTACGACACCTTGAAGCAGTGCGCCCTCATCTCCAAATCAGCCGGGGGGATCGGCGTG 41196 Query 53431 --CCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 | | |||| | |||| ||| |||| ||| || || |||||| | || Sbjct 41195 GCCGTCAGCTC---CATCCGCTCGACGGGCAGCTACATCGCCGGCACCAACGGCAACTCC 41139 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || |||| || ||||| | || | |||||||||||| || ||||| ||||||| Sbjct 41138 AACGGGCTCGTCCCCATGCTAAGGGTTTACAACAACACGGCGCGTTACGTGGACCAGGGC 41079 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || ||| | || | |||||||| ||||| ||||| |||||| ||| | | Sbjct 41078 GGGAACAAGAGACCCGGCGCTTTCGCCATGTACCTGGAGCCCTGGCACTTTGACGTGTTC 41019 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT- 53667 || || || |||||| ||| ||| | || ||| | | | | ||||| || Sbjct 41018 GACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAGGAGCAGAGAGCCAGGGACCTTTTC 40959 Query 53668 TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTA 53727 ||| || ||||||| || ||||| |||||| | |||||||| || |||| |||| Sbjct 40958 TAC-GCCATGTGGATCCCCGACCTGTTCATGAAGCGGGTGGAGAGCAACCAGGACTGGTC 40900 Query 53728 CCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACG 53786 ||| ||||| || |||||||||||||| || | | ||| || || ||||||||| | Sbjct 40899 CCTCATGTGTCCCAACGAGTGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTTGAAA 40841 Query 53787 AGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 || | || | | |||| |||| | |||| ||||||| | | || Sbjct 40840 AGCTCTACACGTCCTACGAGAAGGAGGGGAGGGCCAAGCGCGTGGTCAAGTCCCAGCAGC 40781 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| | || ||| || || |||| || || || ||||| |||||| ||||| | Sbjct 40780 TGTGGCACGCCATCATCGAGTCCCAGACCGAAACCGGCACGCCATACATGCTGTACAAAG 40721 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 | | |||| |||||||||||| |||| | ||| |||||| || |||||| Sbjct 40720 ACGCCTGCAACAGGAAGAGCAACCACCAGAATCTGGGCACCATCAAGTCCAGCAAC 40665 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || || || || || |||||| |||||||||||||| | Sbjct 40158 CCTGCTGCTGGCGCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 40099 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||||| ||||| | |||||||||| ||| || ||| | || ||||| || Sbjct 40098 CATCGAGCCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGGGAGTTCCAGAT 40039 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || |||| |||||| Sbjct 40038 AGTCAACCCCCATCTGCTCAAAGACCTG 40011 >seq14194 Length=7087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| |||| || || || || | ||||| ||||| || || | ||||||| Sbjct 3497 TCGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 3556 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| ||||||||| |||||||||| |||||||||||| || || || ||||| Sbjct 3557 AGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCACGGCAGCGAAGGCC 3616 Query 74892 ACAAGGCGTT 74901 || | ||||| Sbjct 3617 ACCACGCGTT 3626 >seq14193 Length=36040 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 || |||||||| |||| || || || || | ||||| ||||| || || | ||||||| Sbjct 33178 TCGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 33119 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| ||||||||| |||||||||| |||||||||||| || || || ||||| Sbjct 33118 AGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCACGGCAGCGAAGGCC 33059 Query 74892 ACAAGGCGTT 74901 || | ||||| Sbjct 33058 ACCACGCGTT 33049 >seq2427 Length=155780 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| || || || ||||| || | || |||||||| || Sbjct 14988 GTGAAGATGTAACGGGGGCTGGCGGCGTCTTTGCCTCCGTTGATGCGAGTACCGAACTGA 15047 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||||| || || ||||| |||||| |||||||||||| || |||||||| || Sbjct 15048 CCGAGCGGCTGCAGGATGTTCACGTTGTTACTGCCCACAAAGTTCTGGGCCAAGTTCACG 15107 Query 117425 ATCGT 117429 || || Sbjct 15108 ATGGT 15112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547100010728600