Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3008 226 3e-54 seq562 150 2e-31 seq594 89.7 6e-13 >seq3008 Length=76608 Score = 226 bits (250), Expect = 3e-54 Identities = 908/1401 (65%), Gaps = 69/1401 (5%) Strand=Plus/Plus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| ||||| | | ||||||||| || |||||||| || ||| ||||| |||||| Sbjct 40084 GTGTAGGGCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 40143 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 || | | || ||| |||| || ||||||||| ||| | ||| || | | | Sbjct 40144 GGCGCCAGCAGCAGGCTGTTCCTCACGCCGTGCTTGGCGATCTTCTCCTTCAG--CAGGC 40201 Query 80515 CAAAAATCAACCCCAACGCTGTGAC------CCCACATGTCGTGCTGCAAGATGCCCTCC 80568 | | || | | || || | |||||||||||| ||||| ||||||| | Sbjct 40202 CCCAG-TCCAGCAGGTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCC-CG 40259 Query 80569 GACGCCGGAG-ACCCCGCGAACGTCTCGTACGGGCC---CTCCGTCTTGGCCAGCTCACA 80624 | | ||| | | |||||| |||||||||| ||||| ||| | ||||||||| || Sbjct 40260 GCTGACGGGGCAGCCCGCGTACGTCTCGTAGGGGCCGAGCTCGG---CGGCCAGCTCGCA 40316 Query 80625 ---CGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-CACCGC 80680 || |||| ||||| |||| || | | ||| |||| | |||||| || | Sbjct 40317 GCTCGCCTCC---AGGGCGGCGTAGTAGAGGGTCTCGAAGATCTGCGTGTTCAGCAGC-T 40372 Query 80681 GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAA 80740 | || | ||| ||||||| | | ||| | ||||| |||| |||| ||| || | Sbjct 40373 GAGCTTCGGGGCTCTCGAACGGGTAACGCATGAGGATGAAGGCGTCGGCCAAGCCTTGCA 40432 Query 80741 CGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAA 80800 ||||||| | ||||| ||||||||| |||| || |||||||| || | || || | Sbjct 40433 CGCCGATTCCTATCGGCCGGTGGCGCCTGTTGGACTTTTCGGCCTCGGGCACCGGATAGA 40492 Query 80801 AGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAAC---AACCCGTGTAACATCATGAA 80857 |||| | ||||||| ||||| ||| | | || || || || | | Sbjct 40493 AGTTGATGTCGATGATCTTGTTCAAGTT---TTTGACGATTACTTTGGTCACGGCTGCGA 40549 Query 80858 GTTTCTGAAAGTCGAATTGGT-TCCCC----TTCAC--AAATGCCGGAAGGCTCAGGGAC 80910 |||||| |||||| || ||| | | | | || | ||| | || | || Sbjct 40550 GTTTCTTAAAGTCAAA--GGTCTGCTCGGGGGTGACGTACATGTTG--AGCGCGACCGAG 40605 Query 80911 GCCAGATTGCACACGGCCACCTCTTCAGCATCT-GTAAACTCGACGATTTCCGTGCACAA 80969 ||||| ||||| ||||| ||||| || | || || | ||||||||||||||||| | Sbjct 40606 GCCAGGTTGCAGACGGCGACCTCGTC-GTGGCTGGTGTATTCGACGATTTCCGTGCAGAG 40664 Query 80970 ATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTT 81029 || ||||| || || ||||| || | ||||| ||| |||||| ||||| || Sbjct 40665 GTTGCTGGACTTGATGGTGCCCAGATTCTGGTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 40724 Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089 ||| |||||| || || ||||| ||| ||| |||| || |||||||| ||| | || Sbjct 40725 GTACAGCATGTATGGCGTGCCGGTTTCGGTCTGGGACTCGATGATGGCGTGCCACAGCTG 40784 Query 81090 GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTG------GCGTA-AG 81142 | | ||||||||| ||| || ||| || || | | || | | ||| || Sbjct 40785 CTGGGACTTGACCAC---GCG--CTTGGCCCTC-CCCTCCTTCTCGTAGGACGTGTAGAG 40838 Query 81143 CTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 ||| || |||| | || || || | ||||||||||| || ||||| | Sbjct 40839 CTT-TTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTGGGACACATGA 40897 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 || |||||| || | |||| || ||||||||| ||| |||||||| | |||| Sbjct 40898 GGGACCAGTCCTGGTTGCTCTCCACCCGCTTCATGAACAGGTCGGGGATCCACATGGCGT 40957 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||| ||||| | | | | |||||| | ||| ||| || ||| || |||| Sbjct 40958 AGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 41017 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG--ATCGAC----CCCTTGCGAC 81376 | | | ||| ||||| |||||||| |||| |||| | || | | |||| Sbjct 41018 CGAACACGTCAAAGTGCCAGGGCTCCAGGTACATGGCGAAAGCGCCGGGTCTCTTG---T 41074 Query 81377 GGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 || ||||||| |||||||| || || ||| | || | | ||| |||| || | Sbjct 41075 TCCCGCCCTGGTCCACGTAACGCGCCGTGTTGTTGTAAACCCTTAGCATGGGGACGAGCC 41134 Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTG 81496 | | || | ||||| || || |||| ||| | | ||| | ||||| | Sbjct 41135 CGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTGCCCGTCGAGCGGATGGAGCTGACGG 41194 Query 81497 AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 | ||||| || || | | || || || | || ||| | |||| ||| || || | Sbjct 41195 CCACGCCGATCCCCCCGGCTGATTTGGAGATGAGGGCGCACTGCTTCAAGGTGTCGTAGA 41254 Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTT 81616 | ||||||||||| || | |||||| | |||| ||| ||||| |||| ||| || || | Sbjct 41255 TGCCCTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 41314 Query 81617 TTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGT 81676 | | ||| || ||||| || || |||| ||||| |||| | | | |||| ||||| Sbjct 41315 TGGTGCCCGCGTTGAAGAGGGTGGGGGAGGCGTGGGTGAACCACCTCTCCGACAGCAGGT 41374 Query 81677 CATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATA 81735 || || || | | ||||| | || || |||| || |||| | || ||||| Sbjct 41375 TGTACGTCTCGATGGCCGCGTCG-ATGTCCGTTTCGTGGATCCCGACGGACACGCGCATG 41433 Query 81736 AACATGTACTGGGGCGTCTCG 81756 | ||||| ||| ||| |||| Sbjct 41434 AGCATGTGCTGCGGCCGCTCG 41454 >seq562 Length=198046 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | | Sbjct 185742 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 185683 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 185682 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 185623 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 185622 CAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 185563 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || ||||| || ||||||| Sbjct 185562 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCT 185525 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | | Sbjct 189128 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189069 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 189068 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189009 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 189008 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188949 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || ||||| || ||||||| Sbjct 188948 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCT 188911 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || || ||||| ||| | | Sbjct 189356 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 189297 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 189296 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189237 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 189236 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 189177 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || ||||| || ||||||| Sbjct 189176 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCT 189139 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || |||||||| || || |||||||| ||| | | Sbjct 189584 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 189525 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 189524 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 189465 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 189464 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 189405 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || ||||| || ||||||| Sbjct 189404 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCT 189367 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 188900 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACGCTGGAGGTCGAGCCCAGC 188841 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || ||||| ||||| || || || ||||| ||| Sbjct 188840 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATCCCCCCAGATCAG 188781 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 188780 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 188721 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||||||||| || ||||| || ||||||| Sbjct 188720 ATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCT 188683 >seq594 Length=47165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || ||||||| ||| || || || || ||||| || | |||||| Sbjct 29793 ACTCTACGATCTCTGTGCACAGATTGCTGGATTTTATGGTGCCCAGATTCTGCTGGTTGC 29852 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| |||||||||||| ||||||||| ||||| || || ||| |||| Sbjct 29853 TCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGTGTACCAGTTTCTGTCTGCGACT 29912 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||| ||| ||| | || | ||||| ||||| Sbjct 29913 CAATGATGCCGTACCACACCTGCTGGGCCTTCACCAC 29949 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/218 (70%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCC---CTCCGTCTTGGCCAGCTCACAC---GAC 80628 |||||||| ||| | || ||||| ||||| ||||| || ||||||||||| | | Sbjct 29151 GGAGACCCGGCGTAGGTTTCGTAGGGGCCGAGCTCCG-CT--GCCAGCTCACAGCTGGCC 29207 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-CACCGCGCGCCTG 80687 |||| |||| |||| |||||| |||||||| |||| | || | | |||| Sbjct 29208 TCCA---GGGCAGCGTAGTAAATGGTCTCAAAGATCTGAATGTTGAGCAACTGG-GCCTC 29263 Query 80688 TGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGAT 80747 ||| || || | || | ||| | ||||| | || ||||| ||||| || ||||| Sbjct 29264 CGGGCTTTCAAAGGGAAAACGCATTAGGATGAAGGCATCGGCCAGACCCTGCACTCCGAT 29323 Query 80748 GGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCT 80785 | ||||| | |||||||||||| || | |||||||| Sbjct 29324 TCCAATCGGCCTGTGGCGCTTGTTAGACCTCTCGGCCT 29361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570189515581840