Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1580 116 5e-21 seq1579 107 3e-18 >seq1580 Length=61053 Score = 116 bits (128), Expect = 5e-21 Identities = 488/764 (64%), Gaps = 16/764 (2%) Strand=Plus/Minus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTG 13754 ||||||||||||||||| || |||||||| | ||||| |||||||| ||||| ||||| Sbjct 3603 TTTCCCATCGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAGCGACTCCTT 3544 Query 13755 AGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGAC 13814 | || | ||| | || |||||| ||||||| || || |||||| || ||| | Sbjct 3543 CGAGCTGTTTACACTCCTCAGAACATCTACTGTGTGCATGTGGACCAGAAATCCTCTAAA 3484 Query 13815 GAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCAC 13874 | ||| || || ||| || ||||| ||||||||| | ||| Sbjct 3483 GCATTCCAAAAGGCTGTGGAGGCAATTATTTCCTGCTTTCCTAACGTGTTTGTAGCCAGT 3424 Query 13875 CGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATG 13934 | | |||||| || | ||||||| | |||||||| || | | ||||||| Sbjct 3423 ACATTAGAAAGCGTGGTCTATGCCTCCTGGTCCAGAGTGCAGGCAGATTTGAACTGCATG 3364 Query 13935 TCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGAC 13994 ||| ||| || | || |||||| ||| |||| ||| || |||| ||| Sbjct 3363 AAGGATCTGCTGAATTCACGGATCCAGTGGAAATACTTGCTGAACACCTGTGGGACCGAC 3304 Query 13995 TTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAAC 14054 ||||| |||| | |||| || || || | | ||||||||||||| ||| | |||| Sbjct 3303 TTCCCCATCAAAAGCAACGCAGAAATGGTTCAGACGCTGAAGGCCCTCAACGGGAGGAAC 3244 Query 14055 GCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACCGCATCAGGAAGAGGC---AC 14111 | ||||| |||| || ||||| || | | | || || | | || Sbjct 3243 AGCATGGAGTCGGAGG---TGACCAACGACTATAAGAAAGGCCGTTGGCTGTATCATTAC 3187 Query 14112 GTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTC 14171 ||| | | |||||||| |||| ||| ||| || ||||| || Sbjct 3186 AACGTGACTA------ATACTGTGGTCAAGACCGATGTGAAGAAGAGTCCCCCGCCCATC 3133 Query 14172 AGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTC 14231 | | ||| || || | |||||||||||||||| ||||| | | | || ||||| Sbjct 3132 GGCAGCCCGATGTTCACAGGAAACGCTTACTTTGTGGTCAGCAGAGCCTTTGTGGAACAT 3073 Query 14232 GTCCTCAAGGAC-GAGCCGGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACAGCCC 14290 || || ||||| ||| ||| | || || | ||| |||||| |||||||| Sbjct 3072 GTGCTGCAGGACAGAG-AGGTTCAGCAACTTCTGGAGTGGGAGAGGGACACATACAGCCC 3014 Query 14291 CGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGT 14350 || |||||| |||||||||| ||||| ||||| | |||||| | |||| Sbjct 3013 TGATGAGCACTTGTGGGCCACTCTGCAGCGAATGCCCTCCGTGCCCGGATCAGTGCCCGC 2954 Query 14351 TCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTA 14410 || |||||||||| || |||||| ||| | | || |||||| ||| Sbjct 2953 CAACATCAAGTACGATGTGTCAGACATGCAAGCCCTCGCTCGAGCGGTGAAGTGGAGCTA 2894 Query 14411 -CTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGC 14453 ||| || || ||| | || ||||| |||| |||||| || ||| Sbjct 2893 TCTA-GAAGGAGATGTGAAAAAAGGAGCCCCGTACCCCCCCTGC 2851 >seq1579 Length=133821 Score = 107 bits (118), Expect = 3e-18 Identities = 245/369 (66%), Gaps = 0/369 (0%) Strand=Plus/Minus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTG 13754 ||||||||||||||||| || |||||||| | ||||| |||||||| ||||| ||||| Sbjct 128623 TTTCCCATCGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAGCGACTCCTT 128564 Query 13755 AGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGAC 13814 | || | ||| | || |||||| ||||||| || || |||||| || ||| | Sbjct 128563 CGAGCTGTTTACACTCCTCAGAACATCTACTGTGTGCATGTGGACCAGAAATCCTCTAAA 128504 Query 13815 GAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCAC 13874 | ||| || || ||| || ||||| ||||||||| | ||| Sbjct 128503 GGATTCCAAAAGGCTGTGGAGGCAATTATTTCCTGCTTTCCTAACGTGTTTGTAGCCAGT 128444 Query 13875 CGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATG 13934 | | | |||||| || | ||||||| | |||||||| || | | ||||||| Sbjct 128443 AGATTAGAAAGCGTGGTCTATGCCTCCTGGTCCAGAGTGCAGGCAGATTTGAACTGCATG 128384 Query 13935 TCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGAC 13994 ||| ||| || | || |||||| ||| |||| ||| || |||| ||| Sbjct 128383 AAGGATCTGCTGAATTCACGGATCCAGTGGAAATACTTGCTGAACACCTGTGGGACCGAC 128324 Query 13995 TTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAAC 14054 ||||| |||| | |||| || || || | | ||||||||||||| ||| | |||| Sbjct 128323 TTCCCCATCAAAAGCAACGCAGAAATGGTTCAGACGCTGAAGGCCCTCAACGGGAGGAAC 128264 Query 14055 GCCCTGGAG 14063 | ||||| Sbjct 128263 AGCATGGAG 128255 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTG 13754 ||||||||||||||||| || |||||||| | ||||| |||||||| ||||| ||||| Sbjct 129523 TTTCCCATCGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAGCGACTCCTT 129582 Query 13755 AGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGAC 13799 | || | ||| | || |||||| ||||||| || || |||||| Sbjct 129583 CGAGCTGTTTACACTCCTCAGAACATCTACTGTGTGCATGTGGAC 129627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658599571992320