Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq9580 181 9e-41 seq10010 114 1e-20 >seq9580 Length=8214 Score = 181 bits (200), Expect = 9e-41 Identities = 139/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | |||||||||||| || ||||| Sbjct 6629 AGTCCCGTGATGTGTGCGATCATGTAGGTGAGCAGCGCGTAGCTGGCGATATTGAAGGGC 6688 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| |||||||| ||||| | |||||| ||||||||||| ||||| ||||||| | Sbjct 6689 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 6748 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 ||||| |||||||||| ||||||||| || || || ||||||||| Sbjct 6749 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGCGCCATGAGG 6793 Score = 136 bits (150), Expect = 3e-27 Identities = 140/182 (77%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| ||||||||| || || || |||||||||||||| |||||||| || |||||||| Sbjct 7264 CATGTTCGTGTACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACGGGCCCCAGGTC 7323 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || || | ||| || ||||||| ||||| | || |||||||| || Sbjct 7324 GCCCTCCTCTCTCTCGGAGAACCCGAGGTTGTCCAGGAAGTCCCGCGACCCGTTGGCCTC 7383 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30402 ||| ||||| ||||| ||||| |||||||| |||| || || || || |||| |||| Sbjct 7384 CCAAATCTTCACCCCTTTCTCCGAGAGCTCCTTGGCATTCGTCGATCC-CTGAGACACCA 7442 Query 30403 CA 30404 || Sbjct 7443 CA 7444 >seq10010 Length=119630 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || ||||||||||||||||| | ||| |||| || |||| ||||| ||||| || ||| Sbjct 64943 TTGAGCTCCCTGCTGAGGACGATGTTGATCCGGTTGTTCAGCGGTCTGTTCTTCTCCGGG 65002 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||| || ||||| ||||| |||||||||||||||||| || Sbjct 65003 ATGGAAAACCACGTTTTTCTCCCCATGATCACCACGTTCTGCTTGTCT 65050 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||| ||||||||||| || ||| | || ||||| || ||||| ||| ||| Sbjct 63748 ACTCTGGCAGCAGACGATATCTGTCCGGACAGATTTCCGGGAGGAATGTGTCACACTCAA 63807 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCC 110277 | ||| || | | ||||||||||| ||| | ||||||||||||||| |||||| Sbjct 63808 ACTGCTTCAGGATCCGCGTGACAAACAGTCTCCTGGTCCCCGGGCTCTCCAGCAGCTCC 63866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406226430496044