Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq9580 141 8e-29 >seq9580 Length=8214 Score = 141 bits (156), Expect = 8e-29 Identities = 130/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || || || ||||| |||||||| | ||| Sbjct 6641 TGTGCGATCATGTAGGTGAGCAGCGCGTAGCTGGCGATATTGAAGGGCACCCCGAGGCCC 6700 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 ||||| ||||| || || || ||||| || |||||||| || |||| |||||||| || Sbjct 6701 ATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCC-GTCGCACACGTAGAACTG 6759 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| |||||| ||||| |||||||| || ||||| || Sbjct 6760 ACACAGGGCGTGGCAGGGGGGCAGCGCCATGAGGGGGAGGTC 6801 Score = 141 bits (156), Expect = 8e-29 Identities = 130/162 (80%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAA 34623 || ||||| || |||||||| ||||| |||||| |||| || || |||||||| |||| Sbjct 6801 GACCTCCCCCTCATGGCGCTGCCCCCCTGCCACGCCCTGTGTCAGTTCTACGTGTGCGAC 6742 Query 34624 TGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTT 34683 || |||||||| || ||||| || || || ||||| |||||||| | |||||||| || Sbjct 6741 -GGCGAGCTGTCGTGTCAGCTGTACCAGCGCTCGGGCGACATGGGCCTCGGGGTGCCCTT 6683 Query 34684 CAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| || || || ||||| |||||||| ||||||||||| || Sbjct 6682 CAATATCGCCAGCTACGCGCTGCTCACCTACATGATCGCACA 6641 Score = 125 bits (138), Expect = 6e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||| ||||||||||| ||||| || || |||| |||||||||||| Sbjct 7274 TACTCGGCGCCAAAGTGCCTCCACTGGAAACCGTACACGGGCCCCAGGTCGCCCTCCTCT 7333 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | |||||| | |||||||| ||||| || ||||||| || ||||| |||||| Sbjct 7334 CTCTCGGAGAACCCGAGGTTGTCCAGGAAGTCCCGCGACCCGTTGGCCTCCCAAATCTTC 7393 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 ||||| |||||||||||||| ||||| Sbjct 7394 ACCCCTTTCTCCGAGAGCTCCTTGGCATTCGT 7425 Score = 125 bits (138), Expect = 6e-24 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 ||||| |||||||||||||| ||||||||||| ||||| || ||||||| || Sbjct 7425 ACGAATGCCAAGGAGCTCTCGGAGAAAGGGGTGAAGATTTGGGAGGCCAACGGGTCGCGG 7366 Query 34355 GACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTAC 34414 ||||| |||||||| | |||||| | | |||||||||||| |||| || || ||| Sbjct 7365 GACTTCCTGGACAACCTCGGGTTCTCCGAGAGAGAGGAGGGCGACCTGGGGCCCGTGTAC 7306 Query 34415 GGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||||||||| |||||||| || ||||| Sbjct 7305 GGTTTCCAGTGGAGGCACTTTGGCGCCGAGTA 7274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448167385181040