Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq562 161 2e-34 seq3666 86.0 1e-11 >seq562 Length=198046 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 185531 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 185590 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || || || || || | |||||||| ||| Sbjct 185591 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 185650 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 185651 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 185710 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 185711 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 185742 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 188461 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188520 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || || | |||||||| ||| Sbjct 188521 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 188580 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 188581 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 188640 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 188641 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 188672 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 185303 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTATTCGGAGAGGGTGCGGCCATCT 185362 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || || | |||||||| ||| Sbjct 185363 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 185422 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 185423 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 185482 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 185483 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 185514 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 185759 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 185818 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || || | |||||||| ||| Sbjct 185819 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCC 185878 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 185879 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTC 185938 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | |||||| || Sbjct 185939 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 185973 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 188917 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188976 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || || | |||||||| ||| Sbjct 188977 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189036 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 189037 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 189096 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 189097 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189128 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 189145 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 189204 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || || | |||||||| ||| Sbjct 189205 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189264 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 189265 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 189324 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 189325 TTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 189356 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 189373 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 189432 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || || | |||||||| ||| Sbjct 189433 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 189492 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 189493 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCAAGGGTGATGGTC 189552 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| || || ||||| | |||||| || Sbjct 189553 TTGCCAGTGAGGGTTTTCACAAAGATCTGCATATT 189587 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 188689 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 188748 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || || | |||||||| ||| Sbjct 188749 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCC 188808 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||| | || ||||| || ||||| ||| Sbjct 188809 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGCGTGATGGTC 188868 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 188869 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 188900 >seq3666 Length=100071 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||||||| || || |||||||| ||||| | || ||||| Sbjct 19333 CCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATAGTGTCGCTGGGCTCGACCTCA 19392 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||| ||||| ||||| | ||||| || || | |||||| || Sbjct 19393 AGAGTGATGGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCATGTT 19439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158900160825305