Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq9580 170 2e-37 seq10010 107 2e-18 >seq9580 Length=8214 Score = 170 bits (188), Expect = 2e-37 Identities = 136/164 (83%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | |||||||||||| || |||||| Sbjct 6629 AGTCCCGTGATGTGTGCGATCATGTAGGTGAGCAGCGCGTAGCTGGCGATATTGAAGGGC 6688 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| |||||||| || || | |||||| ||||| ||||| ||||| ||||||| | Sbjct 6689 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 6748 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| |||||||||| ||| ||||| || || || |||||||| Sbjct 6749 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGCGCCATGAG 6792 Score = 114 bits (126), Expect = 1e-20 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| |||||||| || |||||||| ||||| || || | ||| Sbjct 7286 AAGTGCCTCCACTGGAAACCGTACACGGGCCCCAGGTCGCCCTCCTCTCTCTCGGAGAAC 7345 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || ||||||| ||||| | || |||||||| ||||| ||||| ||||| ||||| Sbjct 7346 CCGAGGTTGTCCAGGAAGTCCCGCGACCCGTTGGCCTCCCAAATCTTCACCCCTTTCTCC 7405 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30176 |||||||| |||| || || || || |||| |||||| Sbjct 7406 GAGAGCTCCTTGGCATTCGTCGATCC-CTGAGACACCACA 7444 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 29886 CTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 29945 ||||||||||||| ||||||| |||||| |||| ||| || ||||| || ||||| || Sbjct 6910 CTTTGGGGTTCCAAGCACACATGATGATCCGCCGGTCCTCCGGGTTCTTTTTGATGGTGT 6969 Query 29946 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 29990 | | | |||| |||||||| || || || |||| ||| |||| Sbjct 6970 CGATGACGTTCTGCAGCTGGTCAACGCCTCGTCCCGTGTAATCTG 7014 >seq10010 Length=119630 Score = 107 bits (118), Expect = 2e-18 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||||||||||||||| | ||| | || || |||| ||||| ||||| || ||| Sbjct 64943 TTGAGCTCCCTGCTGAGGACGATGTTGATCCGGTTGTTCAGCGGTCTGTTCTTCTCCGGG 65002 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTT 114387 ||||| ||||| || ||||| ||||| ||||||||||||||||| Sbjct 65003 ATGGAAAACCACGTTTTTCTCCCCATGATCACCACGTTCTGCTT 65046 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 |||||||||| ||||||||||| || ||| | || ||||| || |||| ||| ||| Sbjct 63748 ACTCTGGCAGCAGACGATATCTGTCCGGACAGATTTCCGGGAGGAATGTGTCACACTCAA 63807 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCC 114160 | ||| || | | ||||||||||| ||| | |||||||||||||||| |||||| Sbjct 63808 ACTGCTTCAGGATCCGCGTGACAAACAGTCTCCTGGTCCCCGGGCTCTCCAGCAGCTCC 63866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406079260916902