Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq14194 95.1 1e-14 seq14193 95.1 1e-14 seq2247 91.5 1e-13 >seq14194 Length=7087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| ||||| ||||| || || || | |||||||| | |||||||| || Sbjct 3497 TCGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 3556 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || || || || || ||||| ||||| ||||| || ||||| || || || Sbjct 3557 AGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCACGGCAGCGAAGGCC 3616 Query 4692 AC 4693 || Sbjct 3617 AC 3618 >seq14193 Length=36040 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| ||||| ||||| || || || | |||||||| | |||||||| || Sbjct 33178 TCGTCTCTGCTGATCAGCTCGTTGGAGAAAGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 33119 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || || || || || ||||| ||||| ||||| || ||||| || || || Sbjct 33118 AGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATGCCCTCCACGGCAGCGAAGGCC 33059 Query 4692 AC 4693 || Sbjct 33058 AC 33057 >seq2247 Length=89140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||||||||| ||||| || | || | |||||||| || |||||||| || Sbjct 52942 TCGTCTCTGCTAATCAGCTCGTTGGAGTAGGTAAGGCCGGGCATCAACCCTCTCTTCTTG 52883 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||| | || | || || || ||||| ||||| || || || || || ||||| || Sbjct 52882 AGCCAATAGATGGAAGCGAAAGAGCCAGAGAAGAAGATTCCCTCCACCGCCGCAAAGGCC 52823 Query 4692 ACTAATC 4698 || |||| Sbjct 52822 AC-AATC 52817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426961344461681