Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gasterosteus_20aculeatus_20[genbank_20GCA_5F000180675.1_202006-02- 01] 16,957 sequences; 446,610,788 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq9580 167 2e-36 seq2438 104 2e-17 seq2437 104 2e-17 >seq9580 Length=8214 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | |||||||||||| || ||||| Sbjct 6629 AGTCCCGTGATGTGTGCGATCATGTAGGTGAGCAGCGCGTAGCTGGCGATATTGAAGGGC 6688 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| |||||||| ||||| | |||||| ||||||||||| ||||| || |||| Sbjct 6689 ACCCCGAGGCCCATGTCGCCCGAGCGCTGGTACAGCTGACACGACAGCTCGCCGTCGCAC 6748 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||||| |||||||| | ||||||||| || || || ||||||||| Sbjct 6749 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGCGCCATGAGG 6793 >seq2438 Length=21817 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 ||||||||| | || |||||||| ||| | | || | ||||| || || |||||| Sbjct 9435 ATGCAGGTCTTGGGCGTAGTGACGGGGACTTCGTGCCCGGGGGACCATCTCGTTCTGATG 9376 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAAC 69236 ||||| |||||| | ||| |||||| ||| || ||||| ||||||||| |||||||| Sbjct 9375 ACCTGTGAGGACAAAAAGCTGTACGCCTACGATGGAGAGGAGCTGCATTTGGTGGCTTCA 9316 Query 69237 TGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCAT 69296 | ||||| ||| | | | || ||||| | ||||| ||| | || || || | Sbjct 9315 AGCCTGGAGCAGCTACGTAATGAGGGAATCGAGTATCCAGCAGACAAGTCGTACTACAAA 9256 Query 69297 GGGGAGGCCTTC 69308 || ||||||||| Sbjct 9255 GGAGAGGCCTTC 9244 >seq2437 Length=86566 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 ||||||||| | || |||||||| ||| | | || | ||||| || || |||||| Sbjct 38453 ATGCAGGTCTTGGGCGTAGTGACGGGGACTTCGTGCCCGGGGGACCATCTCGTTCTGATG 38394 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAAC 69236 ||||| |||||| | ||| |||||| ||| || ||||| ||||||||| |||||||| Sbjct 38393 ACCTGTGAGGACAAAAAGCTGTACGCCTACGATGGAGAGGAGCTGCATTTGGTGGCTTCA 38334 Query 69237 TGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCAT 69296 | ||||| ||| | | | || ||||| | ||||| ||| | || || || | Sbjct 38333 AGCCTGGAGCAGCTACGTAATGAGGGAATCGAGTATCCAGCAGACAAGTCGTACTACAAA 38274 Query 69297 GGGGAGGCCTT--CAAACA 69313 || |||||||| |||||| Sbjct 38273 GGAGAGGCCTTCCCAAACA 38255 Score = 104 bits (114), Expect = 2e-17 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 ||||||||| | || |||||||| ||| | | || | ||||| || || |||||| Sbjct 80871 ATGCAGGTCTTGGGCGTAGTGACGGGGACTTCGTGCCCGGGGGACCATCTCGTTCTGATG 80812 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAAC 69236 ||||| |||||| | || |||||| ||| || ||||| |||||||||||||||||| Sbjct 80811 ACCTGTGAGGACGAACAGCTGTACGCCTACGATGGAGAGGAGCTGCATGTGGTGGCTTCA 80752 Query 69237 TGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCAT 69296 | ||||| ||| | | | || ||||| | ||||| ||| | || || || | Sbjct 80751 AGCCTGGAGCAGCTACGTAATGAGGGAATCGAGTATCCAGCAGACAAGTCGTACTACAAA 80692 Query 69297 GGGGAGGCCTT--CAAACA 69313 || |||||||| |||||| Sbjct 80691 GGAGAGGCCTTCCCAAACA 80673 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 ||||||||| | || |||||||| ||| | | || | ||||| || || |||||| Sbjct 70455 ATGCAGGTCTTGGGCGTAGTGACGGGGACTTCGTGCCCGGGGGACCATCTCGTTCTGATG 70396 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAAC 69236 ||||| |||||| | ||| |||||| ||| || ||||| ||||||||| |||||||| Sbjct 70395 ACCTGTGAGGACAAAAAGCTGTACGCCTACGATGGAGAGGAGCTGCATTTGGTGGCTTCA 70336 Query 69237 TGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCAT 69296 | ||||| ||| | || | ||||| | ||||| ||| | || || || | Sbjct 70335 AGCCTGGAGCAGCTACTCAAACAGGGAATCGAGTATCCAGCAGACAAGTCGTACTACAAA 70276 Query 69297 GGGGAGGCCTTC 69308 || ||||||||| Sbjct 70275 GGAGAGGCCTTC 70264 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 ||||||||| | || |||||||| ||| | | || | ||||| || || |||||| Sbjct 28620 ATGCAGGTCTTGGGCGTAGTGACGGGGACTTCGTGCCCGGGGGACCATCTCGTTCTGATG 28561 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCT 69233 ||||| |||||| | || |||||| ||| || ||||| ||||||||| |||||||| Sbjct 28560 ACCTGTGAGGACGAACAGCTGTACGCCTACGATGGAGAGGAGCTGCATTTGGTGGCT 28504 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 ||||||||| | || |||||||| ||| | | || | ||||| || || |||||| Sbjct 10472 ATGCAGGTCTTGGGCGTGGTGACGGGGACTTCGTGCCCGGGGGACCATCTCGTTCTGATG 10413 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCT 69233 ||||| |||||| || |||||| ||| || ||||| ||||||||| |||||||| Sbjct 10412 ACCTGTGAGGACGGACAGCTGTACGCCTACGATGGAGAGGAGCTGCATTTGGTGGCT 10356 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 ||||||||| | || |||||||| ||| | | || | ||||| || || |||||| Sbjct 56972 ATGCAGGTCTTGGGCGTAGTGACGGGGACTTCGTGCCCGGGGGACCATCTCGTTCTGATG 56913 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCT 69233 ||||| |||||| || |||||| ||| || ||||| ||||||||| |||||||| Sbjct 56912 ACCTGTGAGGACGGACAGCTGTACGCCTACGATGGAGAGGAGCTGCATTTGGTGGCT 56856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369430836371867